Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0411 ATGGCATCAATTAGAAGAGCATTGTCTCCAGTTCCTCAAGCTAAAACTGTATCGAATGTCGAACTCGGTTCAGTACCTTCTCCCTTATCTAAGTCCTCCTCAAGCACTCAGAATTGTCCACCATCCACTGGATTGTTATCTTCTTCGGTCAGTTTATCGGATTCTCGTGCTTTTGTGTTTGGTGTGTTCTCCCCAAGGTCTTTGAGGATTCTTGAGAGGTCAATGTCAAAGCAAAAAGGCCAGCTTTGGAGGAAGGTGCTTTTCCATTTTTCCATTTGTTTCATGGTTGGTGTTTCTATTGGAATCATTCCACTTGCATCAATGAACTTGTCTAGAAATCTAATGTCTAAGCATCAAGCTTTCTCTATTGATATGATCTCTGCAGTTGGAAATTTTGAGCCGTTAGAGAACGCGAAGATAAATGTGATGCCATCAATTGATGAGGCATTGAAGTTTAATGCCACTTCAAATTCAGCAGAGAAAGAACAAGCACTAGTAGATGAGGTGGGTTATAATAGCTCAAGTAGCAAATTACTCAGTGAAGAACCAAATTTGGAGTCTCAAAAGCTTCTTATCATCGTGACCCCGACATACAATCATCCATTTCAAGCATATTACTTGAATCGCCTCGCACAGACTTTAAAGTCGGTTCCACCTCCTTTGCTCTGGATTGTTGTTGAGATAACTTCCCAATCTGAAGAAACCGTTGACATCTTGAGGAGTAGTGGAATTGTGTACAGGCATCTCATTTGTAAAACTAATCTAACCGATCCGAGCTATAGGAGCATTGCTCATAGAAATCTTGCACTAGCTCACATTGAAACTCACAGTCTCGATGGAATTGTTTACTTTGCAGATGATGATAACATATACTCACTGGAGCTCTTTCAGGAAATGAGAGAAATCAGGCGATTTGGAACATGGACTGTAGCAAGACTTTCAGGGGATACAAGTGCCATTGTCTTGCAAGGGCCCATTTGTAATGGAAAACAAGTAATTGGATGGCACATAAATGAACCAAATGAGATATCTAAAAGATTTCATGCTGAAATGTCAGGTTTTGCCTTCAATAGTACAATACTCTGGGATCCAAAGAGGTGGCACCAGCCCACTCTTGATCCTATCCGGCAGCTTGAATCGGTAAAGGAAGCGTTCTGGATTAGCACATTGATTGAGCAGGTCGTTGAAGATGAAAGCCAAATGGAGGGCTTAATGAACAACTGCACGAAAATTGTGGTGTGGCATATTGATCTTGAATCATCTTATTCGTTCTATCCTCAGAACTGGATTATAAAGAACAATCTAGATGCCATTCTTAACCTTCCACTTGTGTGA 1335 0.4075 MASIRRALSPVPQAKTVSNVELGSVPSPLSKSSSSTQNCPPSTGLLSSSVSLSDSRAFVFGVFSPRSLRILERSMSKQKGQLWRKVLFHFSICFMVGVSIGIIPLASMNLSRNLMSKHQAFSIDMISAVGNFEPLENAKINVMPSIDEALKFNATSNSAEKEQALVDEVGYNSSSSKLLSEEPNLESQKLLIIVTPTYNHPFQAYYLNRLAQTLKSVPPPLLWIVVEITSQSEETVDILRSSGIVYRHLICKTNLTDPSYRSIAHRNLALAHIETHSLDGIVYFADDDNIYSLELFQEMREIRRFGTWTVARLSGDTSAIVLQGPICNGKQVIGWHINEPNEISKRFHAEMSGFAFNSTILWDPKRWHQPTLDPIRQLESVKEAFWISTLIEQVVEDESQMEGLMNNCTKIVVWHIDLESSYSFYPQNWIIKNNLDAILNLPLV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0411 444 CDD GlcAT-I 189 419 IPR005027 GO:0015018|GO:0016020
Lal21g0411 444 Pfam Glycosyltransferase family 43 210 419 IPR005027 GO:0015018|GO:0016020
Lal21g0411 444 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 438 IPR005027 GO:0015018|GO:0016020
Lal21g0411 444 SUPERFAMILY Nucleotide-diphospho-sugar transferases 190 435 IPR029044 -
Lal21g0411 444 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 438 - -
Lal21g0411 444 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 190 433 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0411 Lal-Chr21 2850716 2854694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0411 1 441 Glycosyltransferase AT1G27600 44.570 1.25e-119 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0411 K20869 - gmx:100808765 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0411 21 2850716 2854694 Lal21g0411 21 2850716 2854694 ECH