Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0349 ATGTTTGGGATGCAGCGAGTAATTGATCGGATATGTGCACGACCTGATATTGATGATTTCTTCTGGGACAAAGTTCCAACGCCCATTCTCGACATGGTTGAAAACCCTCTTTGCTTAAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCTTTTGAAATCCGCTTAGAATTGTGTTCTATTATGTCAGGTTCAGAAATATCATTGAAACCAAGTTTGGCAGTGGCGGAGCTGACAGTTGCCATACACCATGTTTTTCATGCTCCTGTAGACAAGATATTGTGGGATGTTGGTGATCAAACATATGCACACAAGATTCTTACAGGAAGGCGATCCCTCATGAAGACAGTGAGACAAAAGAATGGCCTTTCTGGTTTTACTTCTAGATACGAGAGTGAATATGACGCATTTGGAGCAGGTCATGGATGCAACAGTGTTTCTGCTGGACTTGGCATGGCAGTTGCACGTGATATCAAGGGGAGGCGAGAACGTGTAGTTGCAGTTATCAGCAATTTGACGACTATGTCTGGGCAGGTTTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAATGACAGCCGCCACTCTTTACTCCCAAAAATTGAGGAGGGCCCAAAGACATCTGTCAATGCCTTATCTAGTACCCTAAGAAAACTCCAATCCAGCAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGAGTTACAAAACGAATTGGTAGAAGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCTCGTGGGATGATGGGTCCACTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCGGTGGATGGGCACAATATCGAAGATCTAATCTCTGTTCTCCGAGAAGTAGCTTCCCTTGATTCAATGGGTCCTGTCTTAATTCACGTTATAACCAATGAAAATAAGGGAGACGAAAACAGTCTGAGAAGTGATATAACAGACTGGCAGCAGGATGATTCTATTAAATCTGACTTGTTACATTACGCTGTTCGCCCTCGTACATATGGTGATTGCTTTGTGGAGGCTTTGGTTGCAGAAGCGGAGAAAGACAAAGATGTTGTGGTTGTTCATGCAGGAGGTATGATGGAGCCATCACTTGAACTGTTCCGGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCGGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCTTATGACCAGGTGGTCCACGATGTTGATCAACAGAAAAGTCCAGTTCGGTTTGTGATTACAAGTGCGGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGTGCATTTGATATAACATTTATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCGGATGAGGTTGAACTCATGAACATGGTGAGTACTGCTGCTCGTGTTAATGATCGGCCAGTTTGCTTTAGGTATCCAAGGGGTGCCCTGGTTGGGAAAGAGCACACTACTTGTGAAGGAATCCCTATTAAGATTGGAGAAGGAAGAGTTCTTGTTGAAGGTAAAGACATTGCTTTACTGGGATATGGATCAATGGTTCAGAATTGCCTTAAGGCTCATACACTCCTTGCAAATCTTGGGGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCACTTGACATCAACCTTCTGAGACAGCTTTGTAAACACCATTCTTTCCTGATTACTGTGGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAGTTTATTGCACTTGATGGACTTCTTGATGGAAGGATTAAGTGGCGACCAATTGTGTTACCCGACAATTATATCGAGCATGCATCACCAAATGAGCAGCTTGACCAGGCAGGGTTAACTGGACATCATATTGCTGCCACGGCATTGAGTTTGCTCGGTCGTACTCGTGAAGCTCTCCAATTTATGTGTTCATAA 2013 0.4347 MFGMQRVIDRICARPDIDDFFWDKVPTPILDMVENPLCLKNLSLKELKQLAFEIRLELCSIMSGSEISLKPSLAVAELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTVRQKNGLSGFTSRYESEYDAFGAGHGCNSVSAGLGMAVARDIKGRRERVVAVISNLTTMSGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLRKLQSSKSFRRFREAAKGVTKRIGRSMHEWAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLISVLREVASLDSMGPVLIHVITNENKGDENSLRSDITDWQQDDSIKSDLLHYAVRPRTYGDCFVEALVAEAEKDKDVVVVHAGGMMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKSPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMNMVSTAARVNDRPVCFRYPRGALVGKEHTTCEGIPIKIGEGRVLVEGKDIALLGYGSMVQNCLKAHTLLANLGVEVTVADARFCKPLDINLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDNYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALQFMCS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0349 670 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 7 669 IPR005477 GO:0008661|GO:0016114
Lal21g0349 670 Gene3D - 349 524 - -
Lal21g0349 670 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 30 314 IPR005477 GO:0008661|GO:0016114
Lal21g0349 670 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 32 656 IPR005477 GO:0008661|GO:0016114
Lal21g0349 670 SMART Transket_pyr_3 349 514 IPR005475 -
Lal21g0349 670 Pfam Transketolase, C-terminal domain 527 650 IPR033248 -
Lal21g0349 670 Gene3D - 22 321 - -
Lal21g0349 670 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 348 537 IPR029061 -
Lal21g0349 670 CDD TPP_DXS 69 319 IPR005477 GO:0008661|GO:0016114
Lal21g0349 670 CDD TPP_PYR_DXS_TK_like 355 508 - -
Lal21g0349 670 Gene3D - 527 658 IPR009014 GO:0003824
Lal21g0349 670 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 7 669 - -
Lal21g0349 670 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 29 659 IPR005477 GO:0008661|GO:0016114
Lal21g0349 670 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 27 410 IPR029061 -
Lal21g0349 670 SUPERFAMILY TK C-terminal domain-like 522 658 IPR009014 GO:0003824
Lal21g0349 670 Pfam Transketolase, pyrimidine binding domain 350 511 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0349 Lal-Chr21 2375981 2382034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0349 372 609 Acyl Lipid Metabolism Gene Families AT3G13450 25.681 1.77e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0349 K01662 - gmx:100793268 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0349 21 2375981 2382034 Lal21g0349 21 2375981 2382034 ECH