Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0311 ATGGCAACAAGAAGAACATCAAACTTAACTAAATCCATTCTAGCTTCCTTACATGCTTCTAGAACCTTCCACAAACCTTTAACTCGTTCACGCGCCGCCGCGTCTGTCTTCTCTTCATTCCCTCACTATCTCTCTGCTTCTAAGATCATCGACACCGATGTCGCCTCCGCTAAATTCTTATCGCACTCTTTCACTCGTGGCTTCCACGCTTCCAATCCCTCTTATCGCTCAGCTAGTAGCAGTGCTCAGATTGCACAGACAGAGTTCACAGATATGGCATGGGAGGGCATACTTGGTGCTGTAGATGCTGCACGAGTTAGTAAGCAACAAATCGTGGAATCTGAGCATTTAATGAAAGCTCTCTTAGAGCAAAAGGATGGTTTGGCTAGAAGAGTACTTACTAAGGCAGGATTAGACAACACATCGGTGCTGCAGGCTACGGACGACTTTATAGCTCAGCAACCAAAGGTGACAGGTGACACTAGTGGTCCTGTGATCGGTTCACATTTTAGTTCCATCTTGGACAATTCTCGGAAGCACAAGAAAGAAATGGGTGATGATTATGTGTCTGTGGAGCATCTTTTGCTGGCATTTCCTTCAGATAAGAGGTTTGGTCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGGCTTTGAAAGATGCCATCCAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAATCCTGAGGGGAAATATGAGGCATTGGAGAAGTATGGAAATGATCTAACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAGATGATGAAATTCGTCGCTGTATCCAGATATTGTCAAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCTGGCGTGGGGAAAACGGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGCGGAGATGTTCCTGAACCATTGATGAACCGTAAGTTGATCTCCCTCGATATGGGTTCATTGCTTGCTGGTGCGAAGTTCCGTGGAGATTTCGAGGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGTCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAATTTGTTGAAGCCAATGCTCGGACGAGGTGAACTTCGATGTATAGGTGCAACTACGCTGAACGAGTATAGAAAATATATTGAGAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCTGTCAACCATCTGTCGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAGCGCTATGAGTTGCACCATGGAGTCAGAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATCACAGAACGCTTCCTGCCTGACAAAGCCATTGATCTTGTCGACGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCAAAGCCTACGGAATTGGATGAGATAGACAGATCGATTTTGAAATTGGAGATGGAAAAACTTTCTCTGAAAAATGACACTGATAAGGCATCTAAAGAAAGATTAAGCAAGCTTGAAAGTGATTTGAATTTACTTAAGCAGAAGCAAAAGGAATTAGCAGAACAATGGGACAGCGAAAAGGTTTTAATGACTCGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAACTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTGGAAGAAGCTGAAAAGAACTTAGCGGAATTCCGTGAATCTGGGCAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAATCTCCAACAAACAGAGAGAGAAAAGTTGGTCTTTCTGGAACAGGTTCTTCATAAGAGAGTGATTGGTCAAGATATTGCTGTAAAATCAGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTATCTGACCCAAATCGGCCAATTGCGAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACCGAGCTAGCCAAGGCTTTGGCTAGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAAACACGCTGTTTCACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTAGTCCGGAGAAGACCTTACTCTGTCGTACTATTTGATGAGATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGCTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGCTCCCATCACATACTTGAAACCCTTCGTAGCACACAAGACGACAAAGTTGCAGTTTATGATCAGATGAAAAGACAAGTTGTTGAGTTAGCTCGGCAAACATTCCGCCCTGAGTTCATGAATCGAATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCACACAGATCAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAGAACAGGCTCAAGCAGAAGAAAATTGATCTTCAATACACACAAGAAGCTGTTGAACTTCTTGGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTGCTACAACAATTGGTCGAAAATGAAATTGCAATGGGAGTTCTAAGGGGTGATTTCAAAGAAGAGGACTCAATCATAGTTGATGCTGATGTGACTCCATCAGCTAAGGACCATTCTCCCCTAAACAGACTGCATATTAAGAAGCTGGACAACCCTGTTACTGATGCCATGGTTGCCAATGACTAA 2922 0.4292 MATRRTSNLTKSILASLHASRTFHKPLTRSRAAASVFSSFPHYLSASKIIDTDVASAKFLSHSFTRGFHASNPSYRSASSSAQIAQTEFTDMAWEGILGAVDAARVSKQQIVESEHLMKALLEQKDGLARRVLTKAGLDNTSVLQATDDFIAQQPKVTGDTSGPVIGSHFSSILDNSRKHKKEMGDDYVSVEHLLLAFPSDKRFGQQLFKNLQLSEKALKDAIQAVRGSQRVTDQNPEGKYEALEKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCCQPSVEDTISILRGLRERYELHHGVRISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRSILKLEMEKLSLKNDTDKASKERLSKLESDLNLLKQKQKELAEQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLAEFRESGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVFLEQVLHKRVIGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHHILETLRSTQDDKVAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSTQISKIVELQMERVKNRLKQKKIDLQYTQEAVELLGVLGFDPNFGARPVKRVLQQLVENEIAMGVLRGDFKEEDSIIVDADVTPSAKDHSPLNRLHIKKLDNPVTDAMVAND 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0311 973 PANTHER BNAC09G42450D PROTEIN 62 968 - -
Lal21g0311 973 Gene3D - 426 631 IPR027417 -
Lal21g0311 973 PANTHER ATP-DEPENDENT CLP PROTEASE 62 968 - -
Lal21g0311 973 Gene3D - 232 425 IPR027417 -
Lal21g0311 973 ProSitePatterns Chaperonins clpA/B signature 1. 377 389 IPR018368 GO:0005524
Lal21g0311 973 Pfam Clp amino terminal domain, pathogenicity island component 100 151 IPR004176 -
Lal21g0311 973 Pfam Clp amino terminal domain, pathogenicity island component 179 228 IPR004176 -
Lal21g0311 973 SMART ClpB_D2_small_2 859 953 IPR019489 -
Lal21g0311 973 Pfam C-terminal, D2-small domain, of ClpB protein 859 939 IPR019489 -
Lal21g0311 973 CDD AAA 658 813 - -
Lal21g0311 973 Pfam AAA lid domain 425 527 IPR041546 -
Lal21g0311 973 Coils Coil 872 892 - -
Lal21g0311 973 SUPERFAMILY Double Clp-N motif 88 239 IPR036628 -
Lal21g0311 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 632 IPR027417 -
Lal21g0311 973 Coils Coil 495 515 - -
Lal21g0311 973 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 89 942 IPR017730 GO:0005737|GO:0009408|GO:0042026
Lal21g0311 973 Gene3D - 86 231 IPR036628 -
Lal21g0311 973 SMART AAA_5 684 826 IPR003593 -
Lal21g0311 973 SMART AAA_5 281 426 IPR003593 -
Lal21g0311 973 Coils Coil 582 616 - -
Lal21g0311 973 Pfam ATPase family associated with various cellular activities (AAA) 287 420 IPR003959 GO:0005524|GO:0016887
Lal21g0311 973 ProSiteProfiles Clp repeat (R) domain profile. 84 229 IPR004176 -
Lal21g0311 973 Coils Coil 517 544 - -
Lal21g0311 973 Gene3D - 859 951 - -
Lal21g0311 973 Gene3D - 636 857 IPR027417 -
Lal21g0311 973 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 688 706 IPR001270 GO:0005524
Lal21g0311 973 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 733 751 IPR001270 GO:0005524
Lal21g0311 973 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 762 780 IPR001270 GO:0005524
Lal21g0311 973 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 795 809 IPR001270 GO:0005524
Lal21g0311 973 CDD AAA 264 424 - -
Lal21g0311 973 Pfam AAA domain (Cdc48 subfamily) 683 852 IPR003959 GO:0005524|GO:0016887
Lal21g0311 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 939 IPR027417 -
Lal21g0311 973 ProSitePatterns Chaperonins clpA/B signature 2. 718 736 IPR028299 -
Lal21g0311 973 Coils Coil 555 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0311 Lal-Chr21 2061864 2068517 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0311 K03695 - gmx:100782242 1691.01