Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0274 ATGAGGAATAGAAAATGGGTAGCTATGTTTTGTGTTGTGTTGTGTTGTGTTGTGTTGGTGATGGCAGATCCCTATTACCCTTACGCTACTCCCTCACTCGCTGATTCTGACACAGCAAGCATTGCCAGAACTAGCTTTGCCGGTTATATTCCATCCACCGCACCATCATTATTGACTTCTCCTCATGCATCAAATAGGACTGAATTGCGTGGCGCCGGACCAGATTACCAGCAAAAAGATATTAATTTGTATCGGATGGGGGCGTATGGTGTTAATGATACGATTGGTTCTAGAGTTCATCATGAACCTGTTGTTGCAGCCGGGCTTGATGTAAAGCATTATCCATCTCTTGATGATCGTGATCTTAGTAAAAAACGAGATACTTCGTTAGGCGTTAGTCCAGGTGTTCCTGATATACATAGTGAAAGATCGCTCACGAAAAGCAATCATGACGGTGTCTCAATTGCACCAAGGGATTCAAATGTTCTTTTCGTGGGTGGACTTCCGAAGGACTGCACTAGAAGGGAAGTTGGCCACCTTTTCCGTCCCTTTATTGGCTACAAAGATATCAAAGTTATCCACAAGGAGCCTAGACGAAGTGGAGACAAGGCCATGATTCTGTGCTTTGTGGAATTCATTGACGCAAAATGTGCTCTCACTGCCATGGAAGCTCTGCAAGGCTACAGATTTGATGATAAAAAACCTGAGTCGTCGACCTTGAAAATACAATTTGCACACTTTCCTTTCCGTCCACCTGATCATGATCAACAGCTTAAGTCATAG 783 0.4381 MRNRKWVAMFCVVLCCVVLVMADPYYPYATPSLADSDTASIARTSFAGYIPSTAPSLLTSPHASNRTELRGAGPDYQQKDINLYRMGAYGVNDTIGSRVHHEPVVAAGLDVKHYPSLDDRDLSKKRDTSLGVSPGVPDIHSERSLTKSNHDGVSIAPRDSNVLFVGGLPKDCTRREVGHLFRPFIGYKDIKVIHKEPRRSGDKAMILCFVEFIDAKCALTAMEALQGYRFDDKKPESSTLKIQFAHFPFRPPDHDQQLKS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0274 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 234 IPR000504 GO:0003723
Lal21g0274 260 Gene3D - 156 247 IPR012677 -
Lal21g0274 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 247 IPR000504 GO:0003723
Lal21g0274 260 SUPERFAMILY RNA-binding domain, RBD 119 234 IPR035979 GO:0003676
Lal21g0274 260 MobiDBLite consensus disorder prediction 120 152 - -
Lal21g0274 260 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 32 252 - -
Lal21g0274 260 CDD RRM_RBPMS_like 161 243 - -
Lal21g0274 260 SMART rrm1_1 162 238 IPR000504 GO:0003723
Lal21g0274 260 PANTHER PROTEIN COUCH POTATO 32 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0274 Lal-Chr21 1818676 1821767 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0274 - - lang:109343815 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0274 21 1818676 1821767 Lal21g0274 21 1818676 1821767 ECH