Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0159 ATGGCACCTACCACAATCTCTTCACTTATCCTCTTTCTCTTCTTGCTTGGTAGTGTAGCGACAGCAACCGTTTTCACCCTCCAAAACAGTTGCACCCAACCGATCTGGATCGGAACTGTTTCCGGAAACGGCGCCGCCCTTCTCAACAGCGGCGGCAGGCTTTCCATACCGTTTGGATCGTCAATTCAGCTAACCGCTCCGGCAGGCTGGTCAGGTAGTTTCTGGGCCAGAACCGGCTGCAATTTCGATAGCTCCGGCATTGGAAAATGCGCCATCGGAGATTGCGTTGGCGGACTCAAGTGTACCGGCGGTGGTGTTCCGCCGGCGACGGTGGTAAATTTCACAATCGGAACCGCGAGCAATAACAAGGACTTCTACGACGTGAGCGTCGTGGACGGTTACAATGTCGGCATAGGAGTGAAGGCAGAAGGTGGAACTGGTGATTGCAAGTACGCCGGTTGCATTGCGGACTTGAACAGGTACTGTCCGAAAGAGTTGCAGGTAATAGACAATAGCGGTTCCGTTGTGGCGTGTAAGAGCGCGTGTGCGGCGTTTAAGACGGCCGATTTTTGCTGCACCGATGATCACTCCACGGCGAAGAGTTGCAATCCCACAGAATACTCGAAATTGTTCAAGAGCGCGTGCCCCTCCGCTTATAGCTATGCTTACGATGACACTTCAACCACTCAGACCTGTTCCAACTCTAATTACACGATCGCATTTTGTCCGGTCATAGTAGGTTAG 744 0.5255 MAPTTISSLILFLFLLGSVATATVFTLQNSCTQPIWIGTVSGNGAALLNSGGRLSIPFGSSIQLTAPAGWSGSFWARTGCNFDSSGIGKCAIGDCVGGLKCTGGGVPPATVVNFTIGTASNNKDFYDVSVVDGYNVGIGVKAEGGTGDCKYAGCIADLNRYCPKELQVIDNSGSVVACKSACAAFKTADFCCTDDHSTAKSCNPTEYSKLFKSACPSAYSYAYDDTSTTQTCSNSNYTIAFCPVIVG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0159 247 SMART tha2 25 243 IPR001938 -
Lal21g0159 247 PANTHER OS03G0233200 PROTEIN 6 244 IPR001938 -
Lal21g0159 247 Gene3D Thaumatin 23 243 IPR037176 -
Lal21g0159 247 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Lal21g0159 247 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Lal21g0159 247 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Lal21g0159 247 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Lal21g0159 247 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Lal21g0159 247 ProSiteProfiles Thaumatin family profile. 22 243 IPR001938 -
Lal21g0159 247 SUPERFAMILY Osmotin, thaumatin-like protein 24 243 IPR037176 -
Lal21g0159 247 PIRSF PR5 1 245 IPR001938 -
Lal21g0159 247 Pfam Thaumatin family 29 243 IPR001938 -
Lal21g0159 247 CDD TLP-PA 24 242 - -
Lal21g0159 247 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 6 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0159 Lal-Chr21 1080923 1082236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0159 8 243 Receptor kinase-like Gene Family AT5G38280 40.486 8.43e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0159 - - gmx:100809378 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0159 21 1080923 1082236 Lal21g0159 21 1080923 1082236 ECH