Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0078 ATGGACCGTATCTTCTTCTTTCTAATTCCGTTACAGCTATGTCTAATTTTATCATCAGCAAAAGGAGATAATCTGGCTACAAGCCTTATTTCGACATCCATTGATACAACTTCGGGGGAAAGACATTCTGAGAATTATTGTGCAATGCATGACATTTGTGGAAAGCGCAGTGATAATAAAGTATTGAACTGTCCATATGGTTCTGCAGCAGTGAAGCCAGATGATTTGCTCTCATCAAAGATCCAAAGTTTATGCCCAACAATTACGGGGAATATTTGTTGTACAGAAGCTCAGTTTGACACATTAAAGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCTGCATGCTTAAGAAATTTTTTGAATCTGTTCTGCGAGCTTACATGTTCTCCAAATCAAAGTTTATTTATCAATGTGACTTCAGTTGAAAAAGTTGGTGGTAATTTGACAGTGGGAGGGATTGATTATTTTGTAAATGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGAAGTAAAGTTTGGCACCATGAACACTCTAGCTCTACAATTTCTTGGTGCAGGTGCTCAAAATTTTAGAGAGTGGTTTGCTTTTATTGGTAGAAAAGCAGCCCTTAATAGTCTTGGATCACCATATGCAATTACGTTCCGTCGAAATGCAACCATGTCATCTGGCATGAAACCTATGAACGTTTCAACATATTCATGTGGTGATATTTCTCTTGGCTGCTCTTGCGGTGACTGTCCTTCATCTTCAGTGTGCTCTAGTTCACCTTCAACAACCACCCATAAGAAGGATTCCTGCTCCATTAAAGCTGGGTCTTTAACGGTGAAGTGTGTGGATTTGATTTTAACAGTCTTATACATCATACTGATTTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGGTAAGGGAAAGAAAACTGGCATACAGAACAAGACCAGTGTCTAATATCACTAGTGGTGGTGTGCTTCATTCTCTTGATAGGGAGAAAGATGAGAACCTCCCAATGCAGATGATGCAAGATGTTGCACAAAACAGAAATGAGGTCCGGCTCTCAGCAGTGCAAGGATACATGTCAATTTTTTACAGGAAATATGGATCATATGTAGCTAAACATCCAATTACTGTCTTGTTTTCATCTTTGGCTATAGTTCTTCTACTCTGTCTAGGTCTAATCCGATTCAAGGTCGAAACACGGCCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAACAGTTTTTTGATAGCCATCTTGCTCCGTTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCATGTGAATAATACATCACCAAAAATTGTGTCACAGGACAACATTATGTTCCTATTTGAAATACAAAAAAAGGTTGATGCAATCCGTGCTAATCATTCTGGCTTGATAATATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCCGGAAATTTCGATGATTATGGGGGAGTTGACCATCTTAATTATTGTTTTGAGCATTATACCTCAGCAGACCAATGTATGAGTGCATTTCAAGCTCCTCTTGATCCAAGCACTGTGTTAGGAGGTTTCTCTGGGAATCATTATTCTGAGGCATCTGCGTTTATCGTAACCTATCCAGTAAATAATGCTATTGATGAAGAAGGTAATGAAACCGCTAATGCAGTTGCTTGGGAGAAGACCTTTATTCAGATGGTGAAGGATGAGCTTTTACCAATGGTGCAATCACGAAATTTGACGCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGGGAAAGTACCGCAGATGCTATTACTATATTGATTAGCTATCTCGTGATGTTTGCTTATATATCTCTTGCTTTAGGGGATACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTGCAGGAGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGATTTTTTAGTGCACTCGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTCTTGTGCTAGCTGTTGGTGTGGATAATATGTGTATACTTGTTCATGCTGTGAAAAGGCAACAACTGGATTTACCTTTAGAAGGACGAATAAGCAATGCACTCGTGGAAGTTGGACCATCAATAACATTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGGAGCTTTATTTCAATGCCTGCATGCCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTATTGGACTTCCTCCTGCAAGTTACTGCTTTTGTTGCTCTGATAGTTCTTGACTCTTTGAGAGCAGAGAACAAGAGAGTTGATTGTTTTCCATGCATAAAAGTGCATTCAATGCATGCAGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGGCTCGATATATGAAGGAGGTTCATGCACCCATTCTGAGTATTTGGGGAGTAAAAATAGTTGTCATTGCTACTTTTACGGCATTTACACTGGCTAGCATCGCATTAAGCACTAGAATTGAACCTGGTTTGGAGCAGGACATTGTTCTTCCTCGAGACTCATATCTTCAGGGGTATTTCAATAATATTTCAGAATATCTCAGGATTGGACCACCTTTGTATTTTGTTGTAAAGAACTACAACTACAGCTCTGAATCAACACATACAAACGAGCTTTGCTCCATCAGCAAATGCAATTCAACCTCTCTTTTAAATGAGATTGCTAAAGCAGCCCTAGTACCAGATACAAGTTATATAGCTAAGCCAGCTGCTTCGTGGCTTGATGATTTTCTTGTGTGGTTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCATGAATGGGAGTTATTGCCCCCCGGATGATCAGCCTCCTTGCTGTGCTGTTGGTGATGGTTCTTGTGTTTCAGATGGAGTATGTAAAGATTGCACAACGTGCTTCCATCACTCAGGTCTCGACAATGATCGTCCATCTACAACACAGTTTAGGGAGAAACTGCCATGGTTTCTTAGTGCTCTGCCTTCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACAAGCAGTGTTGACCTGAAAGGCTATGAAAGTGGCATAATACAAGCATCGTCATTCCGTACATATCATACCCCCCTCAACAAGCAGGTTGACTATGTTAATTCTATGAGGGCTGCTCGAGATTTTTGTACAAAAGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCCGTGTTTTATATTTTTTTCGAGCAATACCTAAATATATGGAAGACTGCATTGGTCAACCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACGTGCAGTTTATGGAGTTCAGCAATCATTTTATTGGTGTTGGTGATGATTGTCGTTGATCTTATGGGTGTGATGGCCATTCTTGATATCCAGTTGAATGCTGTTTCGGTGGTCAACCTTATTATGTCAGTGGGGATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCGTTTACTGTAACAAGTGGTGACAAGGATCAACGCGTGAAAGAGGCACTGGGTACAATGGGAGCTTCAGTATTCAGTGGTATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCGAGGACAGAAGTTTTTGTGATTTATTACTTCCAAATGTACTTGTCGTTAGTACTACTTGGCTTCTTGCACGGACTTGTTTTCTTGCCGGTGGCATTAAGCATCTTTGGTCCACCTTCAAGATGTACAAACAATGAGCAAGGAGAAGACAGTCCATCAACTTCTTCATAG 3870 0.4039 MDRIFFFLIPLQLCLILSSAKGDNLATSLISTSIDTTSGERHSENYCAMHDICGKRSDNKVLNCPYGSAAVKPDDLLSSKIQSLCPTITGNICCTEAQFDTLKTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVEKVGGNLTVGGIDYFVNDAFGEGLYESCKEVKFGTMNTLALQFLGAGAQNFREWFAFIGRKAALNSLGSPYAITFRRNATMSSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSSSPSTTTHKKDSCSIKAGSLTVKCVDLILTVLYIILISVFLGWGLYHRVRERKLAYRTRPVSNITSGGVLHSLDREKDENLPMQMMQDVAQNRNEVRLSAVQGYMSIFYRKYGSYVAKHPITVLFSSLAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATVPDHVNNTSPKIVSQDNIMFLFEIQKKVDAIRANHSGLIISLQDICMKPLDKDCATQSVLQYFKMDPGNFDDYGGVDHLNYCFEHYTSADQCMSAFQAPLDPSTVLGGFSGNHYSEASAFIVTYPVNNAIDEEGNETANAVAWEKTFIQMVKDELLPMVQSRNLTLAFSSESSIEEELKRESTADAITILISYLVMFAYISLALGDTPHLSSFYISSKVLLGLAGVMLVMLSVLGSVGFFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLDLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAENKRVDCFPCIKVHSMHADFDKGVGQSKPGFLARYMKEVHAPILSIWGVKIVVIATFTAFTLASIALSTRIEPGLEQDIVLPRDSYLQGYFNNISEYLRIGPPLYFVVKNYNYSSESTHTNELCSISKCNSTSLLNEIAKAALVPDTSYIAKPAASWLDDFLVWLSPEAFGCCRKFMNGSYCPPDDQPPCCAVGDGSCVSDGVCKDCTTCFHHSGLDNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVDLKGYESGIIQASSFRTYHTPLNKQVDYVNSMRAARDFCTKVSDSLKIEIFPYSVFYIFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLVMIVVDLMGVMAILDIQLNAVSVVNLIMSVGIAVEFCVHMTHSFTVTSGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVALSIFGPPSRCTNNEQGEDSPSTSS 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0078 1289 Pfam Patched family 419 905 IPR003392 GO:0016021
Lal21g0078 1289 Pfam Patched family 1054 1269 IPR003392 GO:0016021
Lal21g0078 1289 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1077 1275 - -
Lal21g0078 1289 TIGRFAM 2A060601: Niemann-Pick C type protein family 47 1270 IPR004765 GO:0005319|GO:0016021
Lal21g0078 1289 PANTHER PATCHED FAMILY PROTEIN 5 1288 - -
Lal21g0078 1289 ProSiteProfiles Sterol-sensing domain (SSD) profile. 626 789 IPR000731 -
Lal21g0078 1289 Pfam Niemann-Pick C1 N terminus 45 275 IPR032190 -
Lal21g0078 1289 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 580 789 - -
Lal21g0078 1289 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1080 1270 - -
Lal21g0078 1289 Gene3D Multidrug efflux transporter AcrB transmembrane domain 584 798 - -
Lal21g0078 1289 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 5 1288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0078 Lal-Chr21 543303 557757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0078 41 1289 Miscellaneous Gene Families AT1G42470 73.499 0.0 1860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0078 K12385 - gmx:100813262 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0078 21 543303 557757 Lal21g0078 21 543303 557757 ECH