Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0004 ATGGATAACACTTTTCCACGCTCTTCTCCATCTTCCCTGCTGCTACTTCTTTTCATCTTATCGGTTTTGTTTCTTGATGCTCTTGTCATACCAGCAGCGGACATTTCAACAACAACAACAACTAGTCAAAGAGCATCTTCTGCACTCTATGATTGCAATCAATGCATTGGCAAACAAGATATTTCTACTACTACACTCCTCCGCAACAATTACCCTCATCATCAGAAGGAGGAGGACATTGATATAATTGCAGCATACAGTGATGCATATGGCCATGTTCAACTTGCTAGGTTGAAAATGAGCCACTTATCTCATTCCTGGATTTGGGAAAACCCTACTACTCATGCAACAAACAGCACCTCATCGTCCCAGGATTTGATTGAACACAATCCCAACCATGAAACAATACTCAAAACTCCACGTTCCTCGACAATGACTCCAGTCAAGATCAAGCGCCGGATAATGCGGGAAGAAAGAAGGAAAACTCGTGCATCTGAACTTATGCAACAAGACAAAGAAACTGACAATCACATCATATCAGCAGCAATTCAACGCTCTGAAGGATTTGACATAACTGTCAAGGGAAAGTATAGTATATGGAGGAGAGAATATGAAAACCCAAATTCCGGTTCAACTCTAAAACTGATGCGAGATCAAATAATTATGGCCAAAGCATATGCCAACATTGCAAAGTCTAACAACAAACCTCTTCTTTATGATGCTCTTGTCAAACACTCCAGAGAAAGTCAACAAGCTATCGGAGAAGCAACTAATGATTTTGAGCTTCATCTTGGAGCACTTGATCGAGCAAAAGCTATGGGTCATGTTCTCTCTATGGCGAAAGACCAACTTTATGACTGCCTTTTGGTAGCAAGGAAATTAAGGGCGATGCTTCAATCAACTGAAAATAGTGTGAATATACTGAAGAAGAGGAGTGCATTCTTGATTCAGCTGGCTGCAAAAACAGTGCCTAGACCATTGCATTGCCTTCCCCTGCAACTTGCAGCGGATTATTACCTGCAAGACTATCATAAGAAACCAAGTTTCGACAAAGAAAAGATTGAAGATCCCTCTCTTCACCACTATGCTATCTTTTCTGATAATGTACTGGCTACATCTGTGGTTGTTAATTCTACCGTGCAGAATGCGAAGGAACCTGAGAAGCATGTGTTCCATATAGTAACTGATAAATTAAATTTTGCAGCAATGAGAATGTGGTTTCTCATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATATTGATGATTTCAAATGGCTGAATTCCTCATATTGTTCTGTTCTACGTCAACTTGAGTCAGCAAGAATTAAGGAATATTACTTTAAAGCCAATCATCCCTCCTCCCTCTCCGTTGGATCTGACAATCTAAAATATAGGAATCCCAAATATTTGTCAATGCTGAATCACCTAAGGTTCTACCTTCCTGAAGTTTATCCCAAATTAAATAAAATTCTATTCTTGGATGATGACATTGTAGTGCAGAAAGATTTGAGTCCTCTATGGTCAATTGATCTCAGAGGGATGGTGAATGGTGCAGTGGAGACATGCAAGGAGAGCTTCCATAGGTTTGATAAATACCTCAACTTTAGTAATCCACTTATCTCCAACAATTTCAGTCCTGAAGCTTGTGGCTGGGCATATGGCATGAATGTTTTTGACTTGAAGGAGTGGAAGAAACAAAACATTACTGGAATATATCACCGGTGGCAAGATATGAATGATGATAGAACCCTCTGGAAGCTTGGAACCTTACCCCCAGGACTAATCACCTTTTATAACCTCACCTACCCTTTAGATCGAGGCTGGCATGTCTTGGGACTTGGTTATGATCCTGCTCTGAACCTAACAGAGATAGAGAACGCTGCTGTCATTCACTACAATGGAAACTACAAGCCGTGGTTGAATCTTGCTGTTTCCAAGTATAAATCGTACTGGTCCAGATATGTTATGTTTGATAATCAATATCTTAGACTTTGCAACCTTAGTGAATAG 2016 0.4018 MDNTFPRSSPSSLLLLLFILSVLFLDALVIPAADISTTTTTSQRASSALYDCNQCIGKQDISTTTLLRNNYPHHQKEEDIDIIAAYSDAYGHVQLARLKMSHLSHSWIWENPTTHATNSTSSSQDLIEHNPNHETILKTPRSSTMTPVKIKRRIMREERRKTRASELMQQDKETDNHIISAAIQRSEGFDITVKGKYSIWRREYENPNSGSTLKLMRDQIIMAKAYANIAKSNNKPLLYDALVKHSRESQQAIGEATNDFELHLGALDRAKAMGHVLSMAKDQLYDCLLVARKLRAMLQSTENSVNILKKRSAFLIQLAAKTVPRPLHCLPLQLAADYYLQDYHKKPSFDKEKIEDPSLHHYAIFSDNVLATSVVVNSTVQNAKEPEKHVFHIVTDKLNFAAMRMWFLINPPSKATIEVQNIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNKILFLDDDIVVQKDLSPLWSIDLRGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAYGMNVFDLKEWKKQNITGIYHRWQDMNDDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIENAAVIHYNGNYKPWLNLAVSKYKSYWSRYVMFDNQYLRLCNLSE 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0004 671 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 362 663 IPR029044 -
Lal21g0004 671 Coils Coil 291 311 - -
Lal21g0004 671 PANTHER GALACTURONOSYLTRANSFERASE 3-RELATED 57 670 - -
Lal21g0004 671 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 663 IPR029044 -
Lal21g0004 671 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 57 670 IPR029993 GO:0047262
Lal21g0004 671 CDD GT8_like_1 360 657 - -
Lal21g0004 671 Pfam Glycosyl transferase family 8 330 644 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0004 Lal-Chr21 106987 110120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0004 78 671 Glycosyltransferase AT4G38270 67.157 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0004 K13648 - gmx:100781749 1054.66