Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1237 ATGCGTTTTTCATCATCTTCTAGTTCCATTTTGGATTCTCTATTCAATTCTTGCACAACAATTCATCTCACTAAGTCACTTCACGCTCTTCTCTTTGTTTTAGGCAAATCTCATAATGTTGTTCTTTCTACTAAGCTTCTTAATCTCTATGCTTCTTTGGGTTATCTTTCATTATCTCATTCCACTTTTAAACATATTAATAATAAGAATATTTACTCCTGGAATTCAATCATTGCTGCTTATGTTCACTCTCATAGATATACCCAAGCCTTGAATTTTGTTAATGATTTGTTCTCACTATCTTCTCAAAGGCCTGATTTTTACACATTTCCACCTACTTTGAAAGCTTGCCAATGTCTCGTTGATGGAAGGAAGATGCATTGTTGTATTCTGAAGATGGGTTTTGAGAATGATGTCTTTGTGGGTGCTTCATTGATCAATTTGTATTCACGCTTCGGTGGTTTGGATTCTGCATACAAGGTGTTTGTGGGAATGCCTCTGCGTGATGTGGGTTCTTGGAACGCGATGATTTCGGGGTTTTGTCAGAATGGGAATGCGGCTGAGGCGTTGGATGTGTTGAATAAGATGAAAGGTGAGGGATTGAAGATGGATAAGGTTACTGTCTCGAGCATACTTCCAGTTTGTGCACAATCAAATGATATCGTCAGTGGGTTGTTGATTCATTTGTATGTGATAAAGCATGGGTTGGAAGAAGATGTGTTTGTTTCCAATGCTTTGATCAATATGTATTCAAAGTTTGGTAGGCTTGGGGACTCACAAAGGGTTTTTGATTACATGAAAGTGAAGGATCTGGTATCTTGGAATTCCATAATTGCTGCATATGAGCAGAACAATGATCCAACTACTGCACTTGGGCTGTTTAAAGAGATGCAATTCATTGGAATTCGACCTGATTTGTTGACAGTTGTGAGCCTGGCCTCGATTTTGGGTCAATTAAGTGATCAAATGGTTAGCAAGTCAGTTCATGGATTTGTTATGAGACATGAATGGCTTGAAAAGGATGTTGTGATTGGAAATGCACTTGTGAATATGTATGCAAAACTGGGTTCTATGGATTGTGCAAGTACAGTTTTTGAACAGCTTCCTTTGAGAGATATAATTTCATGGAACACTTTGATCACTGGTTATGCTCAAAATGGTCTTGCAAGTGAAGCAATTGATGCTTACAATATGATGGAACAGTGTGAAAACATAATCCCAAACCAAGGGACTTGGGTGAGCATTCTCCCAGCATATTCCCATCTTGGAGCCTTGCAACAAGGAATGAAAATTCATGGGAGGTTAATCAAGAACAGCCTGTACTTGGATGTATTTGTGGCTACCTGCCTGATTGACATGTATGGAAAATGTGGGAGGTTAGATGATGCAATGTCCTTATTCTATGAAATTCCTCGCGAAACTTCAGTTCCTTGGAATGCCATAATATCTGCTCTCGGGATTCATGGGCATGGAGAACAAGCTCTGCAACTTTTCAAGGATATGCTAGCTGAAGGTGTAACTGCAGATCATATTACCTTTATATCTTTGTTGTCGGCCTGTAGCCATTCAGGTTTAGTTGATGAGGGTCAATGGTGTTTTGATATGATGCAGAAAGAGTTTGGGATTAAGCCTGGTTTGAAGCATTATGGCTGCATGGTAGATTTGCTTGGTAGAGCTGGTTATTTGGAAAAGGCATATAGTTTAGTGAGCAGTATGCCGTTACAGCCTGATGCATCCATTTGGGGTGCTCTTCTTGGTGCTTGTAGAATACATGGAAATGTGGAGTTGGGTACGTTCGCTTCAAGTCGGTTGTTAGAAGTCGATTCAGACAATGTTGGCTATTATGTTTTGCTGTCAAATATGTATGCTAATGTTGGAAAATGGGAAGGAGTTGCTAAAGTAAGATCACTGGCCAGAGACCGAGGATTGACGAAAACTCCGGGATGGAGCTCTGTAGTAGTGGGTAGTATAATTGAAGTCTTTTATACTGGGAACCAAACCCATCCAAAATGTATAGAGATATACAATGAATTAAGGGTTTTGACTGCCAAAATGAAGAGCCTTGGTTATGTTCCAGATTATAGTTTTGTCTTGCAAGATGTGGAAGAGGATGAGAAAGAGCAAATTTTGACAAGTCACAGTGAGAGATTGGCAATTGCATTTGGAATTATCAGCACCCCACCCGGAAGTCCCATTAGGATATTTAAAAACCTACGTGTTTGTGGTGATTGCCACAACGCAACTAAGTACATATCCAGAATTACTGAGAGGGACATCGTTCTAACTCAACCACCTAGTGATTCAGTCCCAACTCCCAAGGCCAATTTCCTTGTTGCTACTTCATGGGATAATCAGATTCCATGTTGGGAGATAATGAAGAACATGACTGTTTTGAGCAGTACACCAAAGGCTTCAATTTCTCATGACCAACCTGTTTTGTGCTCTGCTTGGAAGGATGATGGAACAACAGTGTTTTCCGGAGGTTGTCACAAGCAAGTCAAGATGTGGCCACTTACATCTGGTGGACAACCAATGACTGGTGCCATGCATGATTGCTCACATCTAGGGAAAGGCAAGACTTGTGACTCTCCCTTTCCCTCTTTCTCCAAACCCTTCTCTGAAAAGAAGATAATGTCAGAAACAAATTTCCAATTACCAAATGAATGTTGGGAATTAGTTTTCACATTCCTCAACCACCAGAACCATAACCTTAAACCTCTCTCACTTGTCTCAAAGCAATTCCTTTTCATCACTAACAACCTTCAATCCTCTCTCACTATCTCAGATCAAACACTCCCTCACCTCCCTCTTCTCTTTTCAAGGTTCCCCAAGTTACAATCTCTTACTCTCACGCGCTTCAGTGGTGACTTACACGCGCTTCTCAACCAAATCTCACAATCCTCATTATCAATCAATTCTCTCCATATCCGAAGCTGCACGACAATCTCTGCTGATGGGTTTCGAGTTTTTGGGAAAAAGATGAAAACTTTGAAGTCTCTTACTTGTAGCAGTGTTGATTCTCCCACAGTTTCTGATCTTCTTCTCATATCTGAATGCCTCCCTTTTCTTGAAGAATTGGAGATTGGAACAAAGCTCTCAGGTGCTGGTGGTGTGGATAAAAAGGGAAACTCAGGATCCACCGGTGGAGCTGAGAATACATCAGGTGGTTCTTGTGGCAAATCAGGAAGCGTAGGTGTGTCTGGCATTGTAAAAGATGGTGGTGTAGAGAAAAATGGTGTTGGGTCTTGTGGATTGTCAGGTATTGTAAGAGATGGTGGTGTAGAGAAAAATGGTGTTGGGTCTTGTGGATTGTCAGGTATTGTAAGAGATGGTGGTGTAGAGAAAAATGGTGTTGGGTCTTGTGGATTGTCAGGCATTGTAAGAGATGGTGGTGTAGAGAAAAATGGTGTTGGGTTTTGTGGATTGTCAGGCATTGTAAGAGATGGTGGTGTAGAGAAAAATGGTGTTGGGTCTTGTGGATTGTCAGGGAGTAATGGTGGTGGAAGGAGAATGTCTGGTTCTGGTGTAGTTGGTGTTGATAGGAATGGCGGTGTTGAGAATGGGAATGGATCATCTAGTGGTGGTAGAAATGGAAGTTGTGGTGGTGTTGAAAATGTGGGGACAAGTGGTGGTGGAAGAAAGATGTCTGGTAATGGAGGAGATAGTGATGAAAATATTGGTGGGATGTCGAAGGTGGGGACAAGTGGTGGTGGAATTATTAATGGCGGTAAGTTTGGTAGTAGTGATGGTGGTGGTGGTGATGGAACTAATGGTGGAGGTGATGAAGCAGCTGGTGTTGGTAATGGACAACATGGTTGGATTGGTGGTAATGGGCAACAGGGTGCAACAGGTGGTGGTGGACAGGCTGGTGGTGGTGATGGTGGTGGAGGTGAGGGTGGAGGCGGTGATGGAGGTGGTGGTGATGGTGGTGGAGGAGGGGGTGGTGGTGATGGACATGGTAGAGTAGGTGGTGGTGGTGGTGGTGGTGGTGATGGACATGGTAGAGTAGGTGGTGGTGGAGGTGGATTTCTTGGTGTGTAA 4041 0.4232 MRFSSSSSSILDSLFNSCTTIHLTKSLHALLFVLGKSHNVVLSTKLLNLYASLGYLSLSHSTFKHINNKNIYSWNSIIAAYVHSHRYTQALNFVNDLFSLSSQRPDFYTFPPTLKACQCLVDGRKMHCCILKMGFENDVFVGASLINLYSRFGGLDSAYKVFVGMPLRDVGSWNAMISGFCQNGNAAEALDVLNKMKGEGLKMDKVTVSSILPVCAQSNDIVSGLLIHLYVIKHGLEEDVFVSNALINMYSKFGRLGDSQRVFDYMKVKDLVSWNSIIAAYEQNNDPTTALGLFKEMQFIGIRPDLLTVVSLASILGQLSDQMVSKSVHGFVMRHEWLEKDVVIGNALVNMYAKLGSMDCASTVFEQLPLRDIISWNTLITGYAQNGLASEAIDAYNMMEQCENIIPNQGTWVSILPAYSHLGALQQGMKIHGRLIKNSLYLDVFVATCLIDMYGKCGRLDDAMSLFYEIPRETSVPWNAIISALGIHGHGEQALQLFKDMLAEGVTADHITFISLLSACSHSGLVDEGQWCFDMMQKEFGIKPGLKHYGCMVDLLGRAGYLEKAYSLVSSMPLQPDASIWGALLGACRIHGNVELGTFASSRLLEVDSDNVGYYVLLSNMYANVGKWEGVAKVRSLARDRGLTKTPGWSSVVVGSIIEVFYTGNQTHPKCIEIYNELRVLTAKMKSLGYVPDYSFVLQDVEEDEKEQILTSHSERLAIAFGIISTPPGSPIRIFKNLRVCGDCHNATKYISRITERDIVLTQPPSDSVPTPKANFLVATSWDNQIPCWEIMKNMTVLSSTPKASISHDQPVLCSAWKDDGTTVFSGGCHKQVKMWPLTSGGQPMTGAMHDCSHLGKGKTCDSPFPSFSKPFSEKKIMSETNFQLPNECWELVFTFLNHQNHNLKPLSLVSKQFLFITNNLQSSLTISDQTLPHLPLLFSRFPKLQSLTLTRFSGDLHALLNQISQSSLSINSLHIRSCTTISADGFRVFGKKMKTLKSLTCSSVDSPTVSDLLLISECLPFLEELEIGTKLSGAGGVDKKGNSGSTGGAENTSGGSCGKSGSVGVSGIVKDGGVEKNGVGSCGLSGIVRDGGVEKNGVGSCGLSGIVRDGGVEKNGVGSCGLSGIVRDGGVEKNGVGFCGLSGIVRDGGVEKNGVGSCGLSGSNGGGRRMSGSGVVGVDRNGGVENGNGSSSGGRNGSCGGVENVGTSGGGRKMSGNGGDSDENIGGMSKVGTSGGGIINGGKFGSSDGGGGDGTNGGGDEAAGVGNGQHGWIGGNGQQGATGGGGQAGGGDGGGGEGGGGDGGGGDGGGGGGGGDGHGRVGGGGGGGGDGHGRVGGGGGGFLGV 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 402 IPR002885 -
Lal20g1237 1346 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Lal20g1237 1346 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Lal20g1237 1346 TIGRFAM PPR: pentatricopeptide repeat domain 448 472 IPR002885 -
Lal20g1237 1346 TIGRFAM PPR: pentatricopeptide repeat domain 172 204 IPR002885 -
Lal20g1237 1346 TIGRFAM PPR: pentatricopeptide repeat domain 478 509 IPR002885 -
Lal20g1237 1346 SUPERFAMILY RNI-like 888 1028 - -
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Lal20g1237 1346 ProSiteProfiles Trp-Asp (WD) repeats profile. 805 846 IPR001680 GO:0005515
Lal20g1237 1346 MobiDBLite consensus disorder prediction 1037 1058 - -
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 473 IPR002885 -
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 544 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat 244 270 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat 272 301 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat 549 572 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat 374 401 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat 448 472 IPR002885 -
Lal20g1237 1346 Gene3D Tetratricopeptide repeat domain 446 655 IPR011990 GO:0005515
Lal20g1237 1346 Gene3D Ribonuclease Inhibitor 878 1036 IPR032675 -
Lal20g1237 1346 MobiDBLite consensus disorder prediction 1180 1346 - -
Lal20g1237 1346 MobiDBLite consensus disorder prediction 1185 1204 - -
Lal20g1237 1346 SUPERFAMILY WD40 repeat-like 771 851 IPR036322 GO:0005515
Lal20g1237 1346 SMART WD40_4 799 837 IPR001680 GO:0005515
Lal20g1237 1346 Gene3D - 759 864 IPR015943 GO:0005515
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 218 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 135 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 339 767 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 151 314 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 135 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 339 767 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 151 314 - -
Lal20g1237 1346 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 218 - -
Lal20g1237 1346 Pfam DYW family of nucleic acid deaminases 689 762 IPR032867 GO:0008270
Lal20g1237 1346 Pfam PPR repeat family 169 215 IPR002885 -
Lal20g1237 1346 Pfam PPR repeat family 475 521 IPR002885 -
Lal20g1237 1346 Pfam E motif 591 652 IPR046848 -
Lal20g1237 1346 Gene3D Tetratricopeptide repeat domain 2 121 IPR011990 GO:0005515
Lal20g1237 1346 Gene3D Tetratricopeptide repeat domain 122 225 IPR011990 GO:0005515
Lal20g1237 1346 Gene3D Tetratricopeptide repeat domain 226 326 IPR011990 GO:0005515
Lal20g1237 1346 Gene3D Tetratricopeptide repeat domain 327 432 IPR011990 GO:0005515
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 269 IPR002885 -
Lal20g1237 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1237 Lal-Chr20 16832089 16842258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1237 8 761 Glycoside Hydrolase AT3G49170 35.659 6.58e-145 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1237 - - gmx:100802551 1237.63