Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1181 ATGTCCTCTTCACATTCTTGGACACAAATATTTCAGTGGTTAATGAAGCCTAAATTCTACACAAAATGTAAATCATATGTGAAGTTTATAAATATGAGGCTAGAGATAATCCAAAAGAAGAGGAAAGCAGTTCAAAAGTTTATGAAGAGTGACATTGTTGAACTTCTTAAGAATGACCATGATTATGATGCATATAGAAAGGCTGCAGGATTTCTATTCGAGCAAAAATTGTTATACTGCTATGAACTCATTGCAAAGTTTATTGAATGCATATCAGATCATCTTGAAGAACTGAGTAAAAATGGGGATTGCCCTGATGAATGCAAGGAAGCTATACCATCATTGATGTATGCTGCAGCAAGATTTGCTGATCTGCCAGAATTGCGTGACATTAGAACTTTGTTTAGAGAGAAATTTGAGAATTCTCTTGAACCTTATATAAGTAAAGAGTTTGTTGAGAAGTTGAGAAGAGATCCTCCTACAAGAGAAATGAAGATTAATTTATTGTATGATATAGCACAAGAATTCTCTATAGAATGGGATGATAAGGCTTTGGAGAAAACACTTTATGCACAATCTCTAAATGGAGTTCTATCTCCAAACCAATTAGCAAGTGGAGAAGTATCTCAACAGATTTCATCTCCAAACCAATTAGCAAGTGGAGAAGTATCCCAACAGGAGAGGCCTAAGGTTGATAAAACAGACAACCTAGTATCTCTAAGAAAACACAAAGATGAAAGTGATTACAATAAGTCCAAAGGAAAAGAAAGAAACACTATCTCTCAAGGAAAGAAGGATTTCAATGGTGAGATATGGAGTCAACATAGCAGTAGTGAAGATGAAGCAAGTACAGATATGTCATCAATGGATGGCAAAAAGTCAAGTTCAATTTCATTGGGAAGCACTTCTGATGATGAAGTAGAAATTAAAAGGCCATCTTCCTACTGGCTTATTCCACCACCTTACCTCAAACAGAATACAACAAATGAAGGTGGAACCATATCAGACAAAGAAAAAAATGATCCTTCACAACAACCAGAATATGATACAGGGCAAAACAGAAAGGGTAAAAGATCATATATTAGAGGTACATCTCTTCCTACTGAACCCATAAATGCAGTAGAAACATCAACATGGCATGCAAGAAAAATGTCCTTAGATCAAGAGTTGAAGGTTGGTAGAGGGCGTGTGCATCCTAATCTACCAGAGGATTATGATGACTTGGCAGCTCGTGTTGCAGCTCTCAGAGGGAGATAA 1257 0.3636 MSSSHSWTQIFQWLMKPKFYTKCKSYVKFINMRLEIIQKKRKAVQKFMKSDIVELLKNDHDYDAYRKAAGFLFEQKLLYCYELIAKFIECISDHLEELSKNGDCPDECKEAIPSLMYAAARFADLPELRDIRTLFREKFENSLEPYISKEFVEKLRRDPPTREMKINLLYDIAQEFSIEWDDKALEKTLYAQSLNGVLSPNQLASGEVSQQISSPNQLASGEVSQQERPKVDKTDNLVSLRKHKDESDYNKSKGKERNTISQGKKDFNGEIWSQHSSSEDEASTDMSSMDGKKSSSISLGSTSDDEVEIKRPSSYWLIPPPYLKQNTTNEGGTISDKEKNDPSQQPEYDTGQNRKGKRSYIRGTSLPTEPINAVETSTWHARKMSLDQELKVGRGRVHPNLPEDYDDLAARVAALRGR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1181 418 MobiDBLite consensus disorder prediction 206 224 - -
Lal20g1181 418 MobiDBLite consensus disorder prediction 264 303 - -
Lal20g1181 418 PANTHER IST1 FAMILY MEMBER 17 417 IPR005061 GO:0015031
Lal20g1181 418 Gene3D - 13 188 IPR042277 -
Lal20g1181 418 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 17 417 - -
Lal20g1181 418 MobiDBLite consensus disorder prediction 206 371 - -
Lal20g1181 418 MobiDBLite consensus disorder prediction 226 263 - -
Lal20g1181 418 Pfam Regulator of Vps4 activity in the MVB pathway 24 178 IPR005061 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1181 Lal-Chr20 16251949 16257364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1181 - - lang:109330550 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1181 20 16251949 16257364 Lal20g1181 20 16251949 16257364 ECH