Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1170 ATGGATGTGAATGAAGGAAACCCAAAATTCTCAGCGTTCCCTTTCAAACCCTATTCCATTCAAATCGATTTCATGAATGCACTTTATCATTCTCTCAACAATGGCGGTGTCTCCATGTTGGAAAGCCCTACTGGTACTGGGAAAACTATGAGTGTTATCTGTAGTGCTTTGCAATGGGTGGTTGATCAACGACGTCAACAGGAGGCAGGGTTTGTGTGCGGCAACGATAAGGTGAATGATGGCGGGCTTGGTTCAGATGATGAACCTGATTGGATGAGAAACTTTGATGTCAATAAAGATGACCAAGTCAAAGAGGACAAAATGAAAAATAAGAAGGATAAGTTTGGCTATGAGAAGAAGAAGAAGAAGAAGGAGAAGGATAATTGTAAAGAGTCTCTTACTGCAAAGGGGTGTGAGAGTTTGCAAAAGAAAATTGAGACAGTGGATGTTAGTGATAAGGAGTTTTTACTGGAAGAATATGAGAGTGAAGATGAGGATGATCCGTGTTGTGTGTCGTCGAAGAGGAAGGCTACTAAGAGTATCCTTACGTCGTCAAGTGAAGAGGAGTCTGATGAGGAGGAGGTGGAGGAGAAGAAGTTCAAGGTTTACTTTTGTAGTCGGACACATTCACAGCTTTCCCAATTCATAAAGGAGTTAAGGAAGACAGTTTTTGCGACTGAGATGGATGTTGTGAGTTTAGGCTCCAGGAAAAATCTTTGCATTAATCAAGAAGTAATAGCACTTGGAAACTCCACACGTGTAAATGAGCGATGCTTGGAACTTCAGCAGAAAAATAAAAATAAAGCTTCAAAAATTAAGAACTTAAAAGTAGGTGCTGGGGTACACAGAACAAAGGCTTCTTCTGGTTGCCCGATGCTTAGAAAACGTAGATTGCAACGAGAATTCAGGAATGAGGCATCTCAAAGGGGGCCCTTGGATATTGAAGATCTTGCTAGCCTCGGAAGAACTTTGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTTTGAAAGCTGATCTTGTTGTCTTGCCATATCAATCTCTTCTGTCAAAATCATCTCGTGAAGCACTAGGTCTGAATTTGAAATCAAATATTGTTATAATAGACGAAGCTCATAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATTACTTTATCACAGCTAGAAAATGCTCATTGCCATTTGGAGCGATACTTTATGAGATTCCGGAATCTTTTGGGACCTGCTAATCGGAGATACATTCAAACTCTGATGGTCCTCACACAAGCTTTCCTCCGAGTGCTGCACAGTGAGAAAGATGGAAATATCGTAGGTTCTTGCCATGATATAGAAAAGGCTTCTGAAGAAACTAGAGCCTCTGACTTCACGATGGCCATCAATGATTTTATCTTCGAGCTAAATGTAGACAATATCAACTTATTCAAATTGTTAAAGTATATAAGGGAAAGTAATGTCATGCACAAGGTTAATGGCTATGGAGAAAAGCTGTCTACCATGGAGAAGATGTCAGCACACAATAAAACAAGGGAAAATGGTGAGGAGGGAAGCTGTCAATCTGCTTTCCAGGCATTAGCTGACATATTGCAATCACTGACAAACAATGATAGCGATGGAAGGATAATCATTTCCAGGTCTAGACCAACGAGCTTAACGAAACACCAAGGATACATTAAATATGTTATGCTCAGTGGGGAGAAGCTTTTCTCCGAGATTGTAGATCAAGCACATTCTGTTCTATTAGTAGGGGGAACACTTCAACCTATAGAAGAAACAAGGGAGCGACTCTTTCCATGGCTACTGCCGAACCAGTTACATTTCTTCTCATGTGGTCATATTGTCCCTCCAGACAGCATTATGCCAATTGCAGTTTCCCGTGGTCCTTCTGGCCGCTCTTTTGATTTTAGCTACAGCTCCAGGAGCTCACCAGACATGATGCGAGAACTGGGCCTTTTGCTATGTAATTTGGTGAATGTGGTTCCTGAAGGAATTGTAGTTTTCTTCCCTTCTTTTGATTATGAAGGTAAAGTATATGAAAACTGGAAGTCTTCTGGCATCCTTGAAAGGATTACGAAGAAGAAGCGTGTCTTTAGAGAGCCTAGAAATAATATGGACGTTGAATCTGTTCTCAAGGAATATAAAGATGTAATTTGTACATTGTCGGCCACAAATTCAGGAGTAAATCAAGCATCACATACTGGTGCAATTCTCCTCGCTGTTGTTGGTGCGAAGTTATCGGAAGGGATCAACTTAAGTGATGGGATGGGTCGATGCATAGTCATGGTTGGACTACCATATGCTAGCCCATCTGACATTGAGTTGTTGGAGCGGATAAAGCACATTGAAGGATTTCGAAATTCAAAGTCCACCGAAAATCCTAGACTGTCTACGTGTAATGACATATACGGTGGAGATGTACGAGGTGGTTTTGACATCTTAAGAAGTTGCAGCAATAGAGGAAAAGAGTACTACGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTCGAGCGATCCGTCACATTAATGACTATGCAGCAATCTTGTTGGTTGATACAAGGTATGCATGTGATTCCTCAAAAAGGTCATTTCCCCACCCAATCACTAAGCTCCCACAATGGATAAAAGATTGTCTTGTTTCTTCTACCAATAACTATGGTGAAGTGCATAGGTTGGTGCATCAATTTTTCAAATCCAAAAAGACTTCATGCCAATAA 2730 0.4081 MDVNEGNPKFSAFPFKPYSIQIDFMNALYHSLNNGGVSMLESPTGTGKTMSVICSALQWVVDQRRQQEAGFVCGNDKVNDGGLGSDDEPDWMRNFDVNKDDQVKEDKMKNKKDKFGYEKKKKKKEKDNCKESLTAKGCESLQKKIETVDVSDKEFLLEEYESEDEDDPCCVSSKRKATKSILTSSSEEESDEEEVEEKKFKVYFCSRTHSQLSQFIKELRKTVFATEMDVVSLGSRKNLCINQEVIALGNSTRVNERCLELQQKNKNKASKIKNLKVGAGVHRTKASSGCPMLRKRRLQREFRNEASQRGPLDIEDLASLGRTLGTCPYYGSRSMVLKADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLENAHCHLERYFMRFRNLLGPANRRYIQTLMVLTQAFLRVLHSEKDGNIVGSCHDIEKASEETRASDFTMAINDFIFELNVDNINLFKLLKYIRESNVMHKVNGYGEKLSTMEKMSAHNKTRENGEEGSCQSAFQALADILQSLTNNDSDGRIIISRSRPTSLTKHQGYIKYVMLSGEKLFSEIVDQAHSVLLVGGTLQPIEETRERLFPWLLPNQLHFFSCGHIVPPDSIMPIAVSRGPSGRSFDFSYSSRSSPDMMRELGLLLCNLVNVVPEGIVVFFPSFDYEGKVYENWKSSGILERITKKKRVFREPRNNMDVESVLKEYKDVICTLSATNSGVNQASHTGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFRNSKSTENPRLSTCNDIYGGDVRGGFDILRSCSNRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYACDSSKRSFPHPITKLPQWIKDCLVSSTNNYGEVHRLVHQFFKSKKTSCQ 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1170 909 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 9 893 IPR028331 -
Lal20g1170 909 Gene3D - 16 431 IPR027417 -
Lal20g1170 909 SMART ultradead3 13 420 IPR014001 -
Lal20g1170 909 CDD SF2_C_XPD 620 859 - -
Lal20g1170 909 Pfam Helicase C-terminal domain 656 872 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lal20g1170 909 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 893 IPR045028 -
Lal20g1170 909 SMART Cxpdneu3 674 861 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lal20g1170 909 SMART deadxpd 9 415 IPR006554 GO:0003678|GO:0016818
Lal20g1170 909 Pfam DEAD_2 204 392 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lal20g1170 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 421 IPR014013 GO:0005524
Lal20g1170 909 TIGRFAM rad3: DNA repair helicase (rad3) 154 890 IPR013020 GO:0003678
Lal20g1170 909 Gene3D - 634 870 IPR027417 -
Lal20g1170 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1170 Lal-Chr20 16142110 16147746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1170 K11273 - gmx:106794132 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1170 20 16142110 16147746 Lal20g1170 20 16142110 16147746 ECH