Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1162 AAGCTTGTGAAAAGGCACTTTCTTGTGAGTTTTGTAGAAGGTTTACGTTGTTTCGCCATGCGAGGAAGACAGAGAGTAGCATCAAGGGATCACATATTAGTGTCTGATAAAGAAGGAAATGCAGGTAGAAGAACCCCGTCATCCCTCACAGCTTCAGTGCGTTTACCGATTGTCAAACCTGCTTGGCGACGCTCTTTGTGGCATGTAGTAGTGGCTTCAGTTTCGTCATTCTTATATGGTTACCATGTTGGAGTAGTCAACGAAACCTTAGAGAGCATTTCTATAGATCTCAGCTTTAGTGGGAATACATTGGCTGAAGGTCTTGTAGTAAGTACATGCTTAGTAGGTGCTTTTCTCGGATCTTTGTTTAGCGGGTGGATAGCCGATGGGATTGGGCGTAGAAGAAGTTTTCAGTTGTGTGCATTGCCTATGATCATTGGGGCAGGAATGAGTGCAACAGCAAAAAGCCTGTGGGGCATGCTTCTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGTCCACCGGTTGCAGCTCTTTATGTTGCTGAGATCTCACCTCCATCTGTAAGGGGTACTTATGGTGGCTTAACTCAGATTGCAACATGTCTTGGACTCATGAGCTCCCTATTTATTGGATTCCCAGCCAAGGGAATATTGGGTTGGTGGCGAGTTTGTTTCTGGGTATCTATCATTCCTGCTGCAGCACTTGCCCTTTTCATGGAGATCTGTGCCGAGAGTCCTCATTGGCTTTTAAAGAGAGGAAGAAGCGTTGAGGCTGAAGCTGAATTTGAGAAGCTCTTGGGTGCAGTACATGTCAAACCTGCAATGGCTGAACTGTCAAAATCGGGCGATGAACCTGATACAGTAAAACTCTCTGACTTACTCTATGGCTGTCACTCCAGAGTGATGTTCATTGGATCTGCGCTTTTCGCTTTACAGCAACTATCTGGCATAAACGCTGTTTTCTATTTCTCTTCAACCGTCTTTGAAAGCTTTGGTGTTCCATCATATCTTGCAAACACATGCGTAGGAATTTGCAATTTATTAGGGTCAGTTGTTGCAATGATTTTGATGGATAAACTTGGAAGAAAAGTGCTTCTCCTGGGTAGCTTTTTGGGCATGGCAGGATCAATGGGTCTACAAGTTATTGCTGCAAGTTCTTTTGTATCAGGACTTGGAGCTATGTATCTATCTGTTGGTGGCATGTTGTTGTTTGTGCTTTCATTTGCTCTTGGTGCCGGTCCGGTTCCTTGTCTCCTTATGTCTGAAATACTACCTGGCAGGATCAGAGCAAAGGCAATGGCAATTTGCTTGGCCGTGCATTGGGTGATAAACTTCTTCGTTGGTCTGTTATTTTTGCGCTTACTCGAGCAAATTGGGCCACAACTCCTGTATACCTTTTTCGGTTCATGTAGTCTGTTGGCTGTGCTTTTTGTGAAGAAATTTGTTCTGGAAACAAAAGGGAAGTCGCTTCACGAAATCGAGATTGCACTTCTTACACAAGGAACATCCTAA 1518 0.4427 KLVKRHFLVSFVEGLRCFAMRGRQRVASRDHILVSDKEGNAGRRTPSSLTASVRLPIVKPAWRRSLWHVVVASVSSFLYGYHVGVVNETLESISIDLSFSGNTLAEGLVVSTCLVGAFLGSLFSGWIADGIGRRRSFQLCALPMIIGAGMSATAKSLWGMLLGRLFVGTGMGLGPPVAALYVAEISPPSVRGTYGGLTQIATCLGLMSSLFIGFPAKGILGWWRVCFWVSIIPAAALALFMEICAESPHWLLKRGRSVEAEAEFEKLLGAVHVKPAMAELSKSGDEPDTVKLSDLLYGCHSRVMFIGSALFALQQLSGINAVFYFSSTVFESFGVPSYLANTCVGICNLLGSVVAMILMDKLGRKVLLLGSFLGMAGSMGLQVIAASSFVSGLGAMYLSVGGMLLFVLSFALGAGPVPCLLMSEILPGRIRAKAMAICLAVHWVINFFVGLLFLRLLEQIGPQLLYTFFGSCSLLAVLFVKKFVLETKGKSLHEIEIALLTQGTS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1162 505 CDD MFS_GLUT_like 71 486 - -
Lal20g1162 505 ProSitePatterns Sugar transport proteins signature 1. 124 141 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal20g1162 505 PRINTS Sugar transporter signature 76 86 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 PRINTS Sugar transporter signature 161 180 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 PRINTS Sugar transporter signature 314 324 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 PRINTS Sugar transporter signature 400 421 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 PRINTS Sugar transporter signature 423 435 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 ProSiteProfiles Major facilitator superfamily (MFS) profile. 68 488 IPR020846 GO:0022857
Lal20g1162 505 Gene3D MFS general substrate transporter like domains 61 500 IPR036259 -
Lal20g1162 505 ProSitePatterns Sugar transport proteins signature 1. 355 371 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal20g1162 505 TIGRFAM SP: MFS transporter, sugar porter (SP) family 69 495 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal20g1162 505 Pfam Sugar (and other) transporter 69 497 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lal20g1162 505 PANTHER PLASTIDIC GLUCOSE TRANSPORTER 3-RELATED 22 502 - -
Lal20g1162 505 PANTHER - 22 502 IPR045263 -
Lal20g1162 505 SUPERFAMILY MFS general substrate transporter 58 496 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1162 Lal-Chr20 16089962 16096154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1162 24 444 Organic Solute Cotransporters AT1G67300 66.824 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1162 - - aprc:113857086 803.127