Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1144 ATGGGAAAAGTGGTGGTGTTTGCAACGGTGGCAGCAACAGCGACGGCATGCGCGGTGGCTGCATTGGTGACACGGCGGTATTTGACAAAATCAAGAAAGTGGAGAAAATCAATGACAATATTGAAGGATTTGGAAGAGAAAAGTGCAACACCAATTGGGAAATTGAATCAGATTGCAGATGCAATGACGGTGGAGATGCATGCTGGTCTTGCATCTGAAGGTGGAAGCAAACTTAAGATGCTTATCACTTTTGTTCATAATCTTCCAACTGGGGACGAGAAAGGACTATTTTATGCGTTGGACCTTGGAGGAACTAACTTTCGCGTATTACGGGTGCAACTCGGAGGAAAGGAAGGTGGCATTATTAGTCAAGAATTTACTGAAGTGTCAATTCCTCCTAGTTTGATGGTTGGTACATCAAAGGAACTCTTTGACTTTATTGCAACAGAGCTTGCAAAATTTGTTGCCGAAGAAGGCGAAGAATTCCGAGTTCCTGTTGGCGAAAAGCGGCACCTCGGTTTTACCTTTTCCTTCCCAGTAATGCAAACATCCATTGCTTCTGGGAACCTTATCAAGTGGACAAAGGGCTTCTCCATAGATGATGCAGTTGACCAGGACGTCGTAGCCGAATTGACGAAGGCCATTGAGAGACAAGGTCTTGATATGTCTGTAACAGCTCTGGTCAATGATACAGTTGGGACTTTAGCCGGAGGTCGATATGAAAACAAAGACGTCATTGCTGCTGTTATTTTAGGCACTGGAACAAACGCAGCATATGTGGAGCGTGCTCAAGCGATACCAAAATGGCATGGTCCTCCGCCCAATTCCGGAGAAATGGTTATCAACATGGAGTGGGGAAATTTCAGATCAACACACCTTCCATTAACTGAGTATGATAATGAATTAGATGCTGAGAGTTTAAACCCTGGTGAACAAATTTTTGAGAAGATAATTTCTGGCATGTACTTGGGAGAAATTGTTCGTAGAGTGCTACTCAGAATGGCTGAAGAAGGCTTCTTCGGCGAAACTGTTCCCGAGAAATTGAAAGAGAAATTCATATTAAGGACACCCGACATGTCCGCGATTCATCATGACTCATCTGCTGATCTCGGCGTGGTTGGAACCAAACTGAAGGACATTTTGGAGATATCTGATACCTCATTGGCTGTGAGGAAAGTGATAGTTGAGCTCTGCAATATCGTGGCTACACGCGGCGCTCGTCTATCGGCAGCTGGCATTTTCGGTATACTAAAGAAGTTGGGAAAAGACACAATCAATGATGGTGAGAGTGAAAAGAGTGTGATAGCATTAGATGGTGGATTATATGAGCATTACACAGAATATAGCAAGTGCCTAGAGAATACCCTTAAAGAGTTACTTGATGAAAGTGTCTCAGACAGTGTTATCATTGAGCACTCTAGAGATGGTTCAGGCATTGGTGCTGCCCTTCTTGCTGCCTCTCATTCCTAG 1470 0.4408 MGKVVVFATVAATATACAVAALVTRRYLTKSRKWRKSMTILKDLEEKSATPIGKLNQIADAMTVEMHAGLASEGGSKLKMLITFVHNLPTGDEKGLFYALDLGGTNFRVLRVQLGGKEGGIISQEFTEVSIPPSLMVGTSKELFDFIATELAKFVAEEGEEFRVPVGEKRHLGFTFSFPVMQTSIASGNLIKWTKGFSIDDAVDQDVVAELTKAIERQGLDMSVTALVNDTVGTLAGGRYENKDVIAAVILGTGTNAAYVERAQAIPKWHGPPPNSGEMVINMEWGNFRSTHLPLTEYDNELDAESLNPGEQIFEKIISGMYLGEIVRRVLLRMAEEGFFGETVPEKLKEKFILRTPDMSAIHHDSSADLGVVGTKLKDILEISDTSLAVRKVIVELCNIVATRGARLSAAGIFGILKKLGKDTINDGESEKSVIALDGGLYEHYTEYSKCLENTLKELLDESVSDSVIIEHSRDGSGIGAALLAASHS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1144 489 PRINTS Hexokinase family signature 98 114 - -
Lal20g1144 489 PRINTS Hexokinase family signature 172 197 - -
Lal20g1144 489 PRINTS Hexokinase family signature 224 240 - -
Lal20g1144 489 PRINTS Hexokinase family signature 247 261 - -
Lal20g1144 489 PRINTS Hexokinase family signature 312 334 - -
Lal20g1144 489 PRINTS Hexokinase family signature 394 416 - -
Lal20g1144 489 PRINTS Hexokinase family signature 471 487 - -
Lal20g1144 489 PANTHER HEXOKINASE-1 1 489 - -
Lal20g1144 489 Pfam Hexokinase 41 240 IPR022672 GO:0005524|GO:0005975|GO:0016773
Lal20g1144 489 Gene3D - 83 485 - -
Lal20g1144 489 SUPERFAMILY Actin-like ATPase domain 244 487 IPR043129 -
Lal20g1144 489 PANTHER HEXOKINASE 1 489 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lal20g1144 489 SUPERFAMILY Actin-like ATPase domain 26 242 IPR043129 -
Lal20g1144 489 CDD NBD_sugar-kinase_HSP70_actin 99 261 - -
Lal20g1144 489 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lal20g1144 489 Pfam Hexokinase 247 486 IPR022673 GO:0005524|GO:0005975|GO:0016773
Lal20g1144 489 ProSiteProfiles Hexokinase domain profile. 35 486 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lal20g1144 489 Gene3D - 61 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1144 Lal-Chr20 15858228 15863152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1144 K00844 - zju:107435337 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1144 20 15858228 15863152 Lal20g1144 20 15858228 15863152 ECH