Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1042 ATGGGTTCGCGAGGAAGGCCATTATTTGATCTCAATGAGCCACCTGCAGATGATAATGATGAGAGCGATGGTGTTGTCTGCTTCCAGCCCCAAAAGACACTCCCATCAACAAACCCCCATGGTTCTGACTTATTTGCTGCATCGTCTGCTGCCCAAGGAATAGTAAATAATAATGCTTTTCAACATGCGTCATCTGTCTCTGGATTTCAGCCTTTTGTTCGGCCTAAATCTGCTTATGTCACTGAAGCAGATGCTGAATTGAAGAGAACAGGAGATCAGGATTCAAAGGCTTGCTCTTTGTCCAACAGAGATGAGGATGTGAAAGCTACAGAGTCAGGTATATTTATTTTGGAAAATGCTCAATCTACTGAGAGGGAAGAAGGGGAATGGTCTGATGAGGAGGCCTCTGCTAATGTAAATGGAAGTAGTAATTTGAAACAACAAAGTCAACCTGCAGAAGAGAAATCAATATCTGGAACTGTGGATGAGTGTGTTGCAGTTTCTTCCTACAGTAAGTCTAGCAATATTAAAGTTTCTGATAGTATAAATGAAGAAAAGAGTAGCCGCGTTTCTATAGGTCTAGAATCAAATTCAAGTTCTAGTGAACAGAAAAGCAATAGTATACCAAATTCAGAAAGCAATATAAAAAGTGATGCTTCTATTGATGCACAGGAGGAACCCAATTTAGTTCCCAAGCAAAAAGAAGTGAAAGGTATTGAAGCAAGTCATGCACAGAGGTGTGCAAATAATCCTGGGAAGAGGAAGCTTGACCAACGTAAAGAGGAAATGTTGGGAAAGAAACGTAATAGACAAACCGTGTTTCTTAAATTGGAAGATGTTAAGCAAGCAGGTCCGATTAAAACTTCAACCCCTAGAAGGCAGACTTTTGCATCGCCTGTTGTAAGTCGTACTGTAAAGGATGTTCGTACAGTTCCTGCACAAGTTGAACGTGTTGGAATAGTCAAGGAACAGAAACAGGTTGACTCATCTTTTAGTGAAGGGGGCACCAATGCTGAACCCCATGAATCTAAATCTGATTCTAATGGCGATAGTTCTGTACCGCCCGGTAGGTCTAGAAGACTAAATAGTGAGACTGAATCTCCTACAGAGATCAATTTACCACCAATTCCAAGGCTGGGTTCATGGAAGCAACCCACAGATTCGAGGCAGCAGAAGAATGCAGTTGTTTCTAATAGGAAGTCAGGCCTGAGTGGTCAAAGCTCCAATGATGTCAAATTGGGAAACAAAAAACTTCCGATGAAGAAGCATGTTTCTGTCAGCAATCAGTCCCAGGACACATCAGTTGAAAGACTTATACGGGAGGTGACCAGCGAAAAGTTTTGGCATAACCCAGTCTTATTGGAAACTGATTGGAAAACCTGTGATTCAGAGGAGACTGAACTGCAGTGTGTTCCTGGGCGGTTTGAGTCAGTGGAAGAGTATGTCAGAGTATTTGAGCCTTTGCTTTTTGAGGAATGCCGGGCTCAACTATACAGTACTTGGGAAGAATCAACAGAAACAGTGTCGAGAGATACTCACATTATGGTGCGAGTGAAGGCAAATGAATCAAGAGAAAGAGGTTGGTATGATGTGAAGGTCATTCCAGTGCATGATTTTAAATGGTCATTTAAGGAGGGTGATGTTGCGGTCCTTTCGTCCCCGAGACCTGGATCAGCCAGATTCAAGCAGAACAGTGCATCTTTAGCTCAGGAGGATGGAGAATCAGAAATCACTGGACGTGTGGTTGGTACGGTTAGGCGAAATATATCTATTGATACTCGTGATCCTCCTGGTGCAATTTTACATTATTTTGTTGGGGACTCCTACGATCCTAGCAGGCAAGTGCTTATTCCAATTTTTCCATTAGCGACCCTTTTTAATGGTGTGATGGGTGATGATGATCATATCATAAGAAAACTTAAAACTGGAAGCATATGGTATCTCACTGTGCTTGGTTCTCTTGCTACCACACAGAGGGAGTATGTTGCTCTACATGCATTTCGTCGCTTAAATTTGCAGATGCAAACTGCAATCCTTCAGCCTAGTCCAGAACACTTCCCGAAATATGAGCAACATACCCCCGCAATGCCTGAATGCTTCACGCCAAACTTTGTTGAGTATCTTCGTAGGACATTCAATGAACCCCAGTTGGCAGCGATCCAATGGGCAGCTATGCATACAGCTGCTGGCACTAGTAGTGGGACAACAAGGAGGCAAGATCCTTGGCCCTTTACCCTTGTTCAAGGACCTCCAGGAACAGGAAAGACACATACAGTATGGGGAATGTTGAATGTAATTCACCTTGTGCAGTATCAACATTACTACACTTCTTTGCTTAAGCATGTAGCCCCTGAAAGCTACAAGCATGCTAATGATATCAGTTCAGATAGTGTATCTATGGGATCTATTGATGAAGTTCTTCAAAACATGGACCAGAATCTCTTGCATAGTTTGCCTAAGCTCGTTCCAAAACCTAGAATGTTGGTTTGTGCTCCTTCTAATGCTGCCACTGATGAGCTTCTTTCCCGTGTCCTTGATCGTGGGTTTATTGATGGTGAGATGAAAGTGTATCGTCCTGATGTAGCTCGAGTTGGGGTTGATTCTCAGACACGTGCTGCCCAAGCTGTTTCTGTCGAGCGGAGAACTGAACAGCTTCTGGTCAAGAGTCGGGAAGAAGTTCTTGGATGGATGCACCAATTAAAGACTCGCGAGGCACAGTTGACTCAGCAGTTACATGGTCTCCACAGAGAACTAAATGCTACTGCTGCTGGTCGTTCCCAAGGATCTGTTGGTGTTGACCCTGATCTTCTTGTGGCCCAAGATCAGAACCGGGATGCTTTGCTACAGAACCTTGCAGCTGTGGTAGAAGGAAGGGACAAGGTTCTGGTTGAAATGTCTCGTCTTGCCCTTCTGGAAAGTAGGTTCCGACCTGGGAGCGGCTTCAATTTGGAAGAGGTCCGTGCTAGTTTGGAGGCCAGTTTTGCCAATGAAGCTGAGGTAGTTTTCACTACAGTTTCGAGTAGTGGCCGCAAACTGTTCTCTCGTCTTTCCCATGGTTTTGATATGGTGGTCATTGATGAGGCAGCCCAAGCCAGTGAGATGGCAGTTCTGCCTCCCCTTGCTCTTGGTGCAGCACGTTGTGTTCTTGTAGGAGATCCTCAGCAGCTTCCTGCTACAGTCATCAGCAAGGCTGCTGGGACATTGATGTACAGTAGGAGTCTTTTTGAAAGGTTCCAACAAGCAGGATGCCCGACAATGTTGTTGTCTGTGCAGTATAGAATGCATCCTCAAATTCGGGATTTCCCTTCTAGATACTTTTATCAGGGACGTCTTACTGACAGTGAAAGTGTGGTTAAATTGCATGATGAGGTTTACTACAAGGACCCTTTACTCAAACCTTACATATTCTATGATATCAGACATGGACGGGAATCTCACAGAGGTGGATCGGTCTCTTATCAAAACGTACATGAAGCACAATTTTGCCTCCGATTGTATGAACATCTTCAGAAAACATTGAAATCCTTGGGTTTGGGGAAAATTACTGTTGGCATAATTACCCCTTACAAGCTACAATTGAAATGCCTCCAACGAGAGTTTGAAGAAGTCCTTAATTCAGAAGAAGGGAAAGATCTGTATATTAATACAGTAGATGCTTTCCAAGGTCAAGAACGTGATGTCATTATAATGTCCTGTGTACGTGCATCCAGTCATGGTGTTGGCTTTGTGGCAGATATACGTCGAATGAATGTTGCCCTTACGCGTGCAAGAAGGGCCCTTTGGGTCATGGGAAATGCAAATGCTCTGGTGCAATCTGATGATTGGGCTGCATTGATTACTGATGCAAAATCCCGAAATTGCTATATGGAAATGGACTCTCTTCCTAAGGACTTTCTGGTTTCCAAGGGACCTACTTACACTCCATTGCCTGGTAAGTCTTCCACAAATATGAGGGGCTCAAGATCAGCTGCACCAAGATATAGACCAATGGACATGCATATAGAGTCCAGGTCTGGAGCACCTTCTGAGGATGATGATAAAATGAATGCACCGGTAAGCTCCCGAAATGGGAACCATCGTCCATCGAGGTATTCAATGGAGAATTCCGTAGACAATTCGGATCATATGGGTGATAAATCTAGAGATGCCTGGCAGCATGGCATACAGAAGAAGCCGAACTCAGCTGGAACAATGGGAAAGAGAGATGTGTAG 4212 0.4404 MGSRGRPLFDLNEPPADDNDESDGVVCFQPQKTLPSTNPHGSDLFAASSAAQGIVNNNAFQHASSVSGFQPFVRPKSAYVTEADAELKRTGDQDSKACSLSNRDEDVKATESGIFILENAQSTEREEGEWSDEEASANVNGSSNLKQQSQPAEEKSISGTVDECVAVSSYSKSSNIKVSDSINEEKSSRVSIGLESNSSSSEQKSNSIPNSESNIKSDASIDAQEEPNLVPKQKEVKGIEASHAQRCANNPGKRKLDQRKEEMLGKKRNRQTVFLKLEDVKQAGPIKTSTPRRQTFASPVVSRTVKDVRTVPAQVERVGIVKEQKQVDSSFSEGGTNAEPHESKSDSNGDSSVPPGRSRRLNSETESPTEINLPPIPRLGSWKQPTDSRQQKNAVVSNRKSGLSGQSSNDVKLGNKKLPMKKHVSVSNQSQDTSVERLIREVTSEKFWHNPVLLETDWKTCDSEETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVIPVHDFKWSFKEGDVAVLSSPRPGSARFKQNSASLAQEDGESEITGRVVGTVRRNISIDTRDPPGAILHYFVGDSYDPSRQVLIPIFPLATLFNGVMGDDDHIIRKLKTGSIWYLTVLGSLATTQREYVALHAFRRLNLQMQTAILQPSPEHFPKYEQHTPAMPECFTPNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSGTTRRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKHANDISSDSVSMGSIDEVLQNMDQNLLHSLPKLVPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVLGWMHQLKTREAQLTQQLHGLHRELNATAAGRSQGSVGVDPDLLVAQDQNRDALLQNLAAVVEGRDKVLVEMSRLALLESRFRPGSGFNLEEVRASLEASFANEAEVVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEMAVLPPLALGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVVKLHDEVYYKDPLLKPYIFYDIRHGRESHRGGSVSYQNVHEAQFCLRLYEHLQKTLKSLGLGKITVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALITDAKSRNCYMEMDSLPKDFLVSKGPTYTPLPGKSSTNMRGSRSAAPRYRPMDMHIESRSGAPSEDDDKMNAPVSSRNGNHRPSRYSMENSVDNSDHMGDKSRDAWQHGIQKKPNSAGTMGKRDV 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1042 1403 CDD SF1_C_Upf1 1094 1283 IPR041679 -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 175 269 - -
Lal20g1042 1403 Pfam AAA domain 717 1063 IPR041677 GO:0004386
Lal20g1042 1403 Gene3D - 1092 1298 IPR027417 -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 119 159 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 326 429 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1372 1386 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 250 269 - -
Lal20g1042 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 1295 IPR027417 -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1305 1403 - -
Lal20g1042 1403 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1364 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1351 1371 - -
Lal20g1042 1403 Gene3D - 645 1091 IPR027417 -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1 24 - -
Lal20g1042 1403 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1364 IPR045055 -
Lal20g1042 1403 Pfam AAA domain 1070 1266 IPR041679 -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 175 221 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 135 159 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 383 413 - -
Lal20g1042 1403 CDD DEXXQc_SETX 712 1093 - -
Lal20g1042 1403 Coils Coil 897 917 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1307 1321 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 1328 1350 - -
Lal20g1042 1403 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1042 Lal-Chr20 14065798 14073457 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1042 - K10706 gmx:100794516 2318.89