Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1003 ATGCTTCACATTTTTTTCCTCCTTCCTCTTCTCTTATCCACTTCCCATGCATCAGTCAATGACTTTTGTGTAGCAGATCTCAAGGGTCAAGATGGCCCTTCAGGCTATCCTTGCAAGCCTCCTTCCAAAGTAACCACACATGACTTTGTATATGCTGGCTTAGCTGCAGAAGGAAGCACATCAAATATAATCAGTGCAGCTGTAACACCTGCATTTGTTGCTCAATTTCCAGGTCTTAATGGTCTTGGTCTTTCTGCAGCAAGGTTAGACATTGCTCCTGGTGGTGTAATTCCTCTGCATACTCACCCAGGTGCTTCTGAATTACTAATAGTGACTGAGGGTCTTGTCACTGCTGGTTTTATAGCATCAGATAACTCAGTTTATGTTAAGAAATTGTCAAAGGGACAAGTTTTTATTTTGCCACAAGGGTTGTTGCATTTTCAATTATCTTATGGTAAGAGTAAGGCTGTTGCTTATGCTGTTTTCAGTAGCTCAAATCCTGGCCTTCAAATCCTTGATTTTGCACTGTTTGCCAGCAACTTCTCTTCTTCATTGATCACACAGACTACTTTTCTTGATCCTGAACAAGTTAAGAAGCTTAAGAGTGTTCTTGGTGGCAGTGGTTAG 627 0.4131 MLHIFFLLPLLLSTSHASVNDFCVADLKGQDGPSGYPCKPPSKVTTHDFVYAGLAAEGSTSNIISAAVTPAFVAQFPGLNGLGLSAARLDIAPGGVIPLHTHPGASELLIVTEGLVTAGFIASDNSVYVKKLSKGQVFILPQGLLHFQLSYGKSKAVAYAVFSSSNPGLQILDFALFASNFSSSLITQTTFLDPEQVKKLKSVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1003 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 204 - -
Lal20g1003 208 SMART Cupin_1_3 52 198 IPR006045 -
Lal20g1003 208 CDD cupin_OxOx 15 204 - -
Lal20g1003 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Lal20g1003 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Lal20g1003 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Lal20g1003 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Lal20g1003 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Lal20g1003 208 Pfam Cupin 58 198 IPR006045 -
Lal20g1003 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 204 - -
Lal20g1003 208 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1003 Lal-Chr20 13244381 13245007 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1003 16 208 Miscellaneous Gene Families AT1G72610 64.249 9.45e-88 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1003 - - gmx:100816355 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1003 20 13244381 13245007 Lal20g1003 20 13244381 13245007 ECH