Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1001 ATGTTTCGCATTCTTTTGCTCTTCTTTCTTTTCATATCTACTTCCCATGCCTCAGATTTCTGTGTTGCAGACCTAAAGGGTGTAAAAAGCCCTTCAGGTTATCCCTGCAAGTCACATGTTACAGTTGATGACTTTGTATTTTCTGGCTTTAAAGCTGGAAATACCTCAAATGTATTCAAAGCTGCACTCACACCTGCATTTGTTGATGAATTTCCAGGTGTTAATGGCCTTGGCTTTTCTGCAGCACGTTTAGACTTAGATGTTGGTGGCATAATCCCAATGCACTCTCATCCTGGTGGCTCTGAGTTGCTAATAATGGTTTCTGGTCACATCACTGCTGGATTTATAGCATCAGATAATTCAGTTTTTCTTAAGACTCTTTCAAAGGGAGATCTTATGATTTTTCCACAAGGATTGTTGCATTTTCAACTAAATGCTGGTAATACAAAGGCCACTGCTATCTTCGCTTACAGTAGCACGAATCCTGGTGCACAACTCCTTGATCTTGCATTGTTTGGAAACAACTTAGATTCTATGTTGGTGCAAAAATCTACCTTCCTTGATCTTGCCCAAGTGAAGAAGCTTAAGGGTGCTTTTGGTGGTTCTTATTAA 612 0.3987 MFRILLLFFLFISTSHASDFCVADLKGVKSPSGYPCKSHVTVDDFVFSGFKAGNTSNVFKAALTPAFVDEFPGVNGLGFSAARLDLDVGGIIPMHSHPGGSELLIMVSGHITAGFIASDNSVFLKTLSKGDLMIFPQGLLHFQLNAGNTKATAIFAYSSTNPGAQLLDLALFGNNLDSMLVQKSTFLDLAQVKKLKGAFGGSY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1001 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 200 - -
Lal20g1001 203 ProSitePatterns Germin family signature. 90 103 IPR019780 GO:0030145
Lal20g1001 203 Gene3D Jelly Rolls 14 203 IPR014710 -
Lal20g1001 203 SMART Cupin_1_3 48 193 IPR006045 -
Lal20g1001 203 PRINTS Germin signature 95 115 IPR001929 GO:0030145
Lal20g1001 203 PRINTS Germin signature 125 145 IPR001929 GO:0030145
Lal20g1001 203 PRINTS Germin signature 158 173 IPR001929 GO:0030145
Lal20g1001 203 Pfam Cupin 50 192 IPR006045 -
Lal20g1001 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 200 - -
Lal20g1001 203 SUPERFAMILY RmlC-like cupins 17 202 IPR011051 -
Lal20g1001 203 CDD cupin_OxOx 13 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1001 Lal-Chr20 13201538 13202149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1001 1 202 Miscellaneous Gene Families AT5G20630 56.190 1.66e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1001 - - lja:Lj3g3v2590370.1 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1001 20 13201538 13202149 Lal20g1001 20 13201538 13202149 ECH