Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1000 ATGCTTCAAATTCTTTTCCTCCTGTCCCTTTTCTTATCTACCTCTCATGCTTCAGATTTTTGTGTTGCAGACCTAAAGGGTGTAAAAAGCCCTTCAGGTTATCCCTGCAAGTCACATGTTACAGTTGATGACTTTGTATTTTCTGGCTTTAAAGCTGGAAATACCTCAAATGTATTCAAAGCTGCACTCACACCTGCATTTGTTGATGAATTTCCAGGTGTTAATGGCCTTGGCTTTTCTGCAGCACGTTTAGACTTAGATGTTGGTGGCATAATCCCAATGCACTCTCATCCTAGTGGCTCTGAGTTGCTAATAATGGTTTCTGGTCACATCACTGCTGGATTTATAGCATCAGATAATTCAGTTTTTCTTAAGACTCTTTCAAAGGGAGATCTTATGATTTTTCCACAAGGATTGTTGCATTTTCAACTAAATTCTGGTAATAGAAAAGCCACGGCTTTCTTCACTTACAGTAGCACAAACCCTGGTGCACAACTCCTTGATCTTGCATTGTTTGGAAACAACTTAGATTCTGTGTTGGTGCAGAAATCTACCTTACTTGATCTTGCACAAGTGAAGAAGCTTAAGGGTGTTTTTGGTGGTTCTTATTAG 612 0.3938 MLQILFLLSLFLSTSHASDFCVADLKGVKSPSGYPCKSHVTVDDFVFSGFKAGNTSNVFKAALTPAFVDEFPGVNGLGFSAARLDLDVGGIIPMHSHPSGSELLIMVSGHITAGFIASDNSVFLKTLSKGDLMIFPQGLLHFQLNSGNRKATAFFTYSSTNPGAQLLDLALFGNNLDSVLVQKSTLLDLAQVKKLKGVFGGSY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1000 203 PRINTS Germin signature 95 115 IPR001929 GO:0030145
Lal20g1000 203 PRINTS Germin signature 125 145 IPR001929 GO:0030145
Lal20g1000 203 PRINTS Germin signature 158 173 IPR001929 GO:0030145
Lal20g1000 203 ProSitePatterns Germin family signature. 90 103 IPR019780 GO:0030145
Lal20g1000 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 200 - -
Lal20g1000 203 CDD cupin_OxOx 15 199 - -
Lal20g1000 203 SUPERFAMILY RmlC-like cupins 17 200 IPR011051 -
Lal20g1000 203 SMART Cupin_1_3 48 193 IPR006045 -
Lal20g1000 203 Pfam Cupin 50 192 IPR006045 -
Lal20g1000 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 200 - -
Lal20g1000 203 Gene3D Jelly Rolls 14 203 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1000 Lal-Chr20 13175384 13175995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1000 1 202 Miscellaneous Gene Families AT5G20630 57.971 1.42e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1000 - - lja:Lj3g3v2590370.1 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1000 20 13175384 13175995 Lal20g1000 20 13175384 13175995 ECH