Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0402 ATGAGCGGAATAACACATGTTTCATTACCAATCCATTATCAACACATAACACATAAATCAAACACTTTCATCACCACAAACCCAATTCAATTCCTTCCATTCCCCAATGCCACAACAACAAATCAAAACTTCCCACTCCTTTGTTTCTCTGCAAACCCATTATCATCACAGAATCAATCACCACTCGTAGTTGTGGGTTCAGCAAATGCAGACATATATCTTGAGATCGATAGGCTTCCAAAAGAAGGAGAAACTATTTCAGCAAAGACAGGTCAAACCCTTGCTGGTGGCAAGGGTGCTAATCAAGCTACTTGTGCTGCCAAACTCTCTTACCCCACTTATTTTGTCGGCCAGGTTGGGGAAGATGCACATGGGAAACTCATCACCGATGCTTTGCAAAATGGTGGGGTGTGCCTTGATCACTTGAATACGGTTGGGTCTGCTCCTACTGGTCATGCTGTGGTGATGCTCCAGTCTGATGGGCAGAACTCAATCATCATTGTCGGCGGTGCCAACATGAATTGCTGGCCTGACACATTGCCTGATGGGGATTTGGAGGTTGTGAGGAATGCTGGGATTGTTTTGTTGCAGAGGGAGATCCCTGATTCTGTTAATATTCAAGTGGCGAAGGCTGCAAGGAGTGCTGGTGTCCCAGTGATAATGGATGCCGGGGGCATGGATGCGGCAATTCCACAAGAATTACTGAATTTTGTTGATATTCTAAGCCCTAATGAAACTGAACTTGGTAACCTTACAGGAATGCCAACTGAAAGTTTTGAAGAGATTACACAGGCAACAGTAAAATGCCATAAATTGTACCAGAGAGGGGGGAGGATTGGGATTGAAACAGTTAAAGTGATGTTCCATTGTTTGGGAGTTGTTTCATTGATGGACTGGAAGGGAGTTAAGCAAGTTCTTGTGAAATTTGGGGCCAAAGGATCTGCCCTTTTCATAGAAGGCGAAGAACCGATTCAGCAACCTGCCATACCTGCTAAAACAGTCCTCGATACAACCGGAGCAGGTGATACTTTTACAGCTGCTTTTGCTGTGGCCTTAGTAGAGGGCAAATCCAAAAAAGAAGCCCTCAGATTTGCTGCTGCAGCAGCTTCTCTTTGTGTTCAAGTGAAGGGGGCCATTCCCAGCATGCCTGATAGGAAATCAGTTCTGGATCTTCTTAATTATCGTTGA 1188 0.4478 MSGITHVSLPIHYQHITHKSNTFITTNPIQFLPFPNATTTNQNFPLLCFSANPLSSQNQSPLVVVGSANADIYLEIDRLPKEGETISAKTGQTLAGGKGANQATCAAKLSYPTYFVGQVGEDAHGKLITDALQNGGVCLDHLNTVGSAPTGHAVVMLQSDGQNSIIIVGGANMNCWPDTLPDGDLEVVRNAGIVLLQREIPDSVNIQVAKAARSAGVPVIMDAGGMDAAIPQELLNFVDILSPNETELGNLTGMPTESFEEITQATVKCHKLYQRGGRIGIETVKVMFHCLGVVSLMDWKGVKQVLVKFGAKGSALFIEGEEPIQQPAIPAKTVLDTTGAGDTFTAAFAVALVEGKSKKEALRFAAAAASLCVQVKGAIPSMPDRKSVLDLLNYR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0402 395 PRINTS Ribokinase signature 64 85 IPR002139 GO:0016301
Lal20g0402 395 PRINTS Ribokinase signature 91 110 IPR002139 GO:0016301
Lal20g0402 395 PRINTS Ribokinase signature 163 176 IPR002139 GO:0016301
Lal20g0402 395 PRINTS Ribokinase signature 233 248 IPR002139 GO:0016301
Lal20g0402 395 Pfam pfkB family carbohydrate kinase 62 275 IPR011611 -
Lal20g0402 395 Pfam pfkB family carbohydrate kinase 300 384 IPR011611 -
Lal20g0402 395 SUPERFAMILY Ribokinase-like 62 392 IPR029056 -
Lal20g0402 395 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 336 349 IPR002173 GO:0016773
Lal20g0402 395 Hamap Ribokinase [rbsK]. 60 390 IPR011877 GO:0004747|GO:0006014
Lal20g0402 395 CDD ribokinase 61 384 IPR011877 GO:0004747|GO:0006014
Lal20g0402 395 Gene3D - 60 394 IPR029056 -
Lal20g0402 395 PANTHER SUGAR KINASE 59 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0402 Lal-Chr20 3226696 3233531 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0402 K00852 - zju:107414300 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0402 20 3226696 3233531 Lal20g0402 20 3226696 3233531 ECH