Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0398 ATGGCTACTCATACCCCAAAAAATATCCTCATTACTGGGGCAGCTGGATTTATCGCATCTCACTTTGCCAACCGGCTTGTCCGGAACTATCCTGAGTACAAAATTGTTGTGCTTGACAAACTTGATTACTGTTCCAATCTGAAGAACCTTATTCCTTCAAAGTCATCTCCCAATTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACTGAATCTATTGACACAATAATGCACTTTGCTGCTCAAACTCATGTTGACAACTCATTTGGTAATAGCTTTGAGTTCACTAAGAACAACATATATGGCACTCATGTCTTATTAGAAGCCTGCAAGGTAACTGGACAGATCAAAAGGTTCATCCATGTGAGCACTGATGAGGTTTATGGAGAGACAGATGAGGATGCTATTGTTGGAAACCATGAGGCTTCTCAGCTACTTCCGACAAATCCATACTCTGCAACAAAAGCTGGGGCTGAAATGCTTGTCATGGCATATGGTAGGTCTTATGGGTTACCTGTGATCACGACACGTGGAAACAATGTATATGGGCCTAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTCCTGGCTCTGCAAGGCAAGCCTCTCCCAATTCATGGGGATGGCTCTAATGTGAGAAGTTATTTATATTGTGAAGACGTTGCTGAGGCTTTTGAAGTCATCCTTCACAAGGGAGAGGTTGGGCATGTTTACAATATCGGAACCAAGAAGGAAAGGAGAGTTATTGATGTAGCCCAAGATATTTGCCGACTTTTCTCGAAGGACCCAGATGCTAGTATAAAATTCGTAGAGAACAGACCATTTAATGACCAGAGATACTTCCTTGATGATGAAAAGCTAAAGATCTTGGGCTGGTCGGAGAGGACCACTTGGGAAGAGGGGTTGAAGAAAACCTTAGACTGGTATACCAAGAATCCAGATTGGTGGGGTGATGTTAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGCTAGAGAGACATTTTGATGGATCTGAAGAAGAAAAACCGGAGTCATATGTCTCAACTAATACTCGAATGGTGGTTCCACCGTCCAAGAGTGTTGGTACCCCACAGAAACATCCTCTCAAGTTCTTGATCTATGGTAGAACAGGATGGATTGGAGGCTTGCTGGGGAAATTGTGTGAAAAACAAGGAATTCCGTATGAATATGGAAAAGGGCGCTTAGAGGATCGCTCATCACTCGTGGCTGACATTCAAAGTGTGAAGCCAACACATATTTTTAATGCTGCTGGAGTGACTGGCAGACCCAACGTTGATTGGTGTGAAACTCATAAAACAGAAACCATCCGCGCCAATGTTGCTGGGACTTTAACATTGGCTGATGTGAGCAGAGAGCATGGGCTCTTGGTGATAAATTACGCAACTGGGTGCATATTTGAGTATGATGCAGCTCATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCATGGGTTCTTTCTATTCCAAGACGAAGGCCATGGTTGAGGAGCTATTGAGAGAATATGACAATGTATGCACCCTCAGGGTTCGCATGCCAATTTCATCAGACCTGAGCAATCCACGCAATTTCATTACCAAGATTTCTCGCTATAACAAGGTAGTTAACATTCCAAACAGCATGACTGTTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGAGGAACCTGAGGGGCATATGGAACTTCACAAATCCAGGGGCTGTTAGCCATAATGAGATTCTTGAGATGTACAGGGATTACATTGATCCGAACTTCAAGTGGAGTAACTTCACACTCGAAGAGCAAGCCAAGGTAATAGTTGCTGCAAGAAGCAACAATGAGATGGATGGCTCCAAATTGAAGAATGAGTTTCCGGAGTTGCTTTCCATCAAGGAATCACTGATCAAGTTGGTCTTTGAGCCAAACAAGAAAACTGCTTAA 2010 0.4343 MATHTPKNILITGAAGFIASHFANRLVRNYPEYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAIVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLALQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAQDICRLFSKDPDASIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTLDWYTKNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSEEEKPESYVSTNTRMVVPPSKSVGTPQKHPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQSVKPTHIFNAAGVTGRPNVDWCETHKTETIRANVAGTLTLADVSREHGLLVINYATGCIFEYDAAHPEGSGIGFKEEDKPNFMGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWSNFTLEEQAKVIVAARSNNEMDGSKLKNEFPELLSIKESLIKLVFEPNKKTA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0398 669 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Lal20g0398 669 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Lal20g0398 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Lal20g0398 669 Gene3D - 200 322 - -
Lal20g0398 669 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Lal20g0398 669 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 667 - -
Lal20g0398 669 Gene3D - 375 669 - -
Lal20g0398 669 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 667 - -
Lal20g0398 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 380 645 IPR036291 -
Lal20g0398 669 CDD dTDP_HR_like_SDR_e 385 657 - -
Lal20g0398 669 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Lal20g0398 669 Gene3D - 9 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0398 Lal-Chr20 3191628 3195677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0398 8 319 Miscellaneous Gene Families AT4G00110 26.946 5.51e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0398 K12450 - gmx:100789909 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0398 20 3191628 3195677 Lal20g0398 20 3191628 3195677 ECH
Lal20g0398 20 3191628 3195677 Lal1g1593 1 18304459 18308272 LSH