Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0397 ATGGAAATAGCCAATGATCCAGTCATTAAGAAATCGAAAAGGCTGACATCTGTTGTATGGAATCACTTTGAAAGGGTTAGGAAGGCTGACACGTGTTATGCTGTTTGTGTGCATTGTAACAAGAAACTTAGTGGATCAAGTAACAGTGGAACTTCTCATCTGAGGAATCACTTGATGCGATGTCTGAAAAGGTCGAACTTTGATGTGTCTCAACTACTATCAGCAAAGAGAAGGAAAAAAGATAATACCGTCACTGTTGCAAATATTGGTTTTGATGAAGGTCGTGTCAAAGAAGAATACATAAAGCCAACAATCATCAAGTATGAACCTGATCTCAAGAAAGATGAAATCATCAACTTTGGGGGTCGGAAATTTGATCAGGAGAAGAGTCAACTTGATCTCGCACGCATGATCATATTGCATGGATACCCATTGAACATGGTTGAACATGTGGGGTTCAAAGTCTTTGTGAAGAACCTCCAGCCTCTCTTTGAGTTTGTGCCAAATAGCGTTATAGAGATTTCTTGTATGGAAATCTACGGGAAGGAGAAAGAGATAGTGTATAATATGATAAACAGATTACATGGCAGGATTAATCTGTCAATTGAAAGCTGGTCTTCCGCAGAAAATACTTCATATTTGTGTATAGTTGCACATTATATTGATGAGGAATGGACATTACAAAAGAAGATCCTGAACTTTGTGACACTTGATCCTTCCCATACTGAAGACTTGCTTCCGGAAGTGATTATTAAATGTCTGAATGAGTGGGATATAGACTATAAGCTGTTTGCCTTAACATTTGATGATTTTTGCGTTGATGATGACATCACTCTTATAATCAAACAACGAATTTCTGAGAAAAGGCCATTTCTTAGTACCCGCCAACTACTTGACATCCGCTCTGCAGCACATCTCTTGAACTCTATGGTTCAAGATGCCATAGATGCACTGCATGAGGTGATCCAAAAGATTCGAGAAAGCATCAGATATATTAAAAGTTCACAAGACATACAAGGGAAATTTAATGAAATTGCTCAACAAGCTGGGATTGACTCTCGGAAGGCCCTAATTCTTGATTTTCCAGTTCAATGGAAGTCAACATATCTCATGCTTGAAACAGCTGTAGAATACAAGACTGCGTTTTTGCTCTTCCAAGAGCAAGATCTCTCCTATTCATCAGCTCTAAATGATGAAGAGTGGGAATGGGCAACCTCGGTTACTGCTTATTTGAAACTTTTCCTTGAAATTACCAATGTCTTCTCGAGCAACTTATTTCCTACTTCAAACATATATTTCCCGGAGATTTGTGACATCCATATCCAATTATTTGATTGGTGCAGAAGTTCAGATAGTTTTCTCAGTTCTGTGGCATTGAAGATGAAAGCCAGGTTTGATACGTACTGGAGCAAGTGCAGTTCGGCTTTAGCAGTCGCAGCTATATTAGACCCCCGATTTAAAATGAAGTTGGTTGAATACTACTACTCCCAGATTTATGGCAGCACTGCTTTGGATCGTATCAAAGAAGTTTCTGATGCAGTCAAAGAACTTTTCGATTCATATTCTATCTGTTCAACTATGGTTGATCAAGGGTCAGCTTTGCCTTGCAATAGCTTACCTAGTACAAGTTATGATGCTAGGGATAGACTGAAAGGCTTTAACAAATTCCTTTATGAGACATCACAGAATCAGAGCATAGCATCAGACTTGGACAAGTACTTGGAGGAACCAATCTTTCCTCGTAGTTCCGATTTTAACATATTGAACTGGTGGAAAGTACATATGCCAAGGTACCCTATCTTGTCAATGATGGCACGTGATGTTCTTGGCACACCGATGTCAACAGTGGCACCAGAATTGGCATTTAGCACGGGAGGGAGGGTGTTATATCCTACTAGCGCTTCATTAAACCCTGATACACAACAGGCTTTAATATGTACACAAGATTGGCTCCGAAACGAATCAGGAGATTTAAGTACATCCTCGAACCATGTTGCTCTACCCCTTCTCATTGAATAA 2019 0.3947 MEIANDPVIKKSKRLTSVVWNHFERVRKADTCYAVCVHCNKKLSGSSNSGTSHLRNHLMRCLKRSNFDVSQLLSAKRRKKDNTVTVANIGFDEGRVKEEYIKPTIIKYEPDLKKDEIINFGGRKFDQEKSQLDLARMIILHGYPLNMVEHVGFKVFVKNLQPLFEFVPNSVIEISCMEIYGKEKEIVYNMINRLHGRINLSIESWSSAENTSYLCIVAHYIDEEWTLQKKILNFVTLDPSHTEDLLPEVIIKCLNEWDIDYKLFALTFDDFCVDDDITLIIKQRISEKRPFLSTRQLLDIRSAAHLLNSMVQDAIDALHEVIQKIRESIRYIKSSQDIQGKFNEIAQQAGIDSRKALILDFPVQWKSTYLMLETAVEYKTAFLLFQEQDLSYSSALNDEEWEWATSVTAYLKLFLEITNVFSSNLFPTSNIYFPEICDIHIQLFDWCRSSDSFLSSVALKMKARFDTYWSKCSSALAVAAILDPRFKMKLVEYYYSQIYGSTALDRIKEVSDAVKELFDSYSICSTMVDQGSALPCNSLPSTSYDARDRLKGFNKFLYETSQNQSIASDLDKYLEEPIFPRSSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTVAPELAFSTGGRVLYPTSASLNPDTQQALICTQDWLRNESGDLSTSSNHVALPLLIE 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0397 672 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Lal20g0397 672 PANTHER BED FINGER-RELATED 4 655 IPR045259 -
Lal20g0397 672 Pfam hAT family C-terminal dimerisation region 569 651 IPR008906 GO:0046983
Lal20g0397 672 Pfam Domain of unknown function (DUF4413) 422 521 IPR025525 GO:0003677
Lal20g0397 672 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Lal20g0397 672 SUPERFAMILY Ribonuclease H-like 195 653 IPR012337 -
Lal20g0397 672 SMART bed5 14 64 - -
Lal20g0397 672 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Lal20g0397 672 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 4 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0397 Lal-Chr20 3186435 3190139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0397 - - lja:Lj0g3v0188699.1 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0397 20 3186435 3190139 Lal20g0397 20 3186435 3190139 ECH