Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0385 GACGAGATCCACTTATTAATTTTTTTAAAACATCCTAAAATCCCAATCGTTGTGTATTTCATTTTGCGTGTGGCGCTTTTTCTTATTCCTATTCAAGCTTCTTTCTCCTTTTCTTCTTCTTTCATCGTTTCTCTCTCTAGAAGTGAAATCACAACATCAATGGCGGGTTACAGAGCAGAGGATGACTACGACTACCTCTTCAAGGTGGTTCTGATCGGTGACTCAGGTGTTGGCAAGTCCAACCTTCTCTCCAGGTTCACAAAGAACGAGTTCAACCTCGAGTCCAAGTCCACCATTGGTGTTGAGTTCGCAACTCGTACTTTGAACGTCGATTCCAAAGTCATCAAGGCTCAGATCTGGGACACTGCTGGTCAAGAAAGATACCGAGCCATCACCAGTGCTTACTATCGTGGGGCAGTAGGTGCACTTCTTGTGTATGATGTCACTCGCCATGCAACATTTGAGAATGTTGACAGATGGCTTAAAGAATTGCGAAACCACACAGATGCCAACATTGTTGTGATGCTTGTCGGGAATAAATCAGATCTTCGCCACCTTGTGGCCGTATCAACTGAAGATGGGAAGTCTTATGCCGAGAAAGAATCACTTTACTTCATGGAAACCTCAGCTCTGGAGTCTACTAATGTAGAGAGTGCATTCGCCGATGTTCTGACTCAAATCTACCATATCGTTAGCAAAAAGGCAGTACAGGCGGAAAATGGAACCGCGTCCGTGCCAGCCAAAGGAGAGAAAATAGATATTAAAAATGATGTGTCTGCCATGAAGAGAGTTGGTTGCTGCTCAAGCTAA 810 0.4407 DEIHLLIFLKHPKIPIVVYFILRVALFLIPIQASFSFSSSFIVSLSRSEITTSMAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDANIVVMLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALESTNVESAFADVLTQIYHIVSKKAVQAENGTASVPAKGEKIDIKNDVSAMKRVGCCSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0385 269 CDD Rab11_like 64 228 - -
Lal20g0385 269 SMART ran_sub_2 72 260 - -
Lal20g0385 269 Pfam Ras family 68 228 IPR001806 GO:0003924|GO:0005525
Lal20g0385 269 SMART rho_sub_3 69 226 IPR001806 GO:0003924|GO:0005525
Lal20g0385 269 SMART ras_sub_4 64 230 - -
Lal20g0385 269 PRINTS Transforming protein P21 ras signature 67 88 - -
Lal20g0385 269 PRINTS Transforming protein P21 ras signature 90 106 - -
Lal20g0385 269 PRINTS Transforming protein P21 ras signature 108 130 - -
Lal20g0385 269 PRINTS Transforming protein P21 ras signature 170 183 - -
Lal20g0385 269 PRINTS Transforming protein P21 ras signature 205 227 - -
Lal20g0385 269 ProSiteProfiles small GTPase Rho family profile. 60 228 - -
Lal20g0385 269 ProSiteProfiles small GTPase Rab1 family profile. 62 267 - -
Lal20g0385 269 PANTHER RAS-RELATED PROTEIN RABA1B 54 269 - -
Lal20g0385 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 236 IPR027417 -
Lal20g0385 269 Gene3D - 59 267 IPR027417 -
Lal20g0385 269 ProSiteProfiles small GTPase Ras family profile. 59 269 IPR001806 GO:0003924|GO:0005525
Lal20g0385 269 TIGRFAM small_GTP: small GTP-binding protein domain 65 221 IPR005225 GO:0005525
Lal20g0385 269 PANTHER DRAB5-RELATED 54 269 - -
Lal20g0385 269 SMART rab_sub_5 67 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0385 Lal-Chr20 3061572 3064563 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0385 K07904 - gmx:547654 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0636 2 3800993 3803203 Lal20g0385 20 3061572 3064563 ECH
Lal20g0385 20 3061572 3064563 Lal20g0385 20 3061572 3064563 ECH