Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0375 ATGATTCCTTCCATTAACACCACCATCACCACAAGTGCTCTTCCCAGCTCATTGTTTCTACAACCTGGTGTTGCTTCCTTCAATGTAATTTCCCCTCATTTCAAACCAAAACCACATCTTTCCAAATTCTCCATCACTTGCTCTGCCACTTCCTCATCTGATCCCCTCTTGGTTAAGGCTGCCAGGGGAGATCCTGTTAGTCGGCCTCCGGCATGGATGATGCGCCAGGCAGGAAGGTACATGGCTGCTTACAAAAAGCTTGCTGAGAAATATCCATCCTTCCGAGAGAGGTCAGAGATAACCGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACGCCTCTACCTGCACTCGGTATTGATTTTGACATAGAAGACGTAAGGGGACCTGTTATACAGTCACCTATACGCTCTGAGGAGGGATTGAAGTCTTTGCATCCAATTGATCTGGATAAGCTTAGGTTTGTTGGAGAATCGCTTAAGATACTGCGCAAGGAGGTTGGTGGTCAAGCCGCTGTTTTGGGTTTTGTAGGAGCACCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACATGCACATATACAACCATTAAGAGCATGTGCCATACAGCACCACATGTATTGAAGACTCTGCTTTCTCATTTGACGCAGGCGATAGCAGATTACATTGTTTTCCAAGTAGAATCCGGGGCTGACTGCATACAAATATTTGATTCATGGGGCGGGCAACTACCGCCAGATATGTGGGATCGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAACTTGGTCAAGAAAAAATGCCCTAAAACCCCAATTGTTTTGTATATAAATGGTAATGGTGGTCTTCTCGAGCGAATGAAGGATACTGGAGTTGATGTTATCGGGTTAGACTGGACCGTGGATATGGCAGATGGAAGAAGACGATTGGGTAGTGACATAGGTGTGCAGGGAAATGTGGATCCTGCCTACTTATTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGGCCTAGACGGCACATCCTTAATCTCGGGCATGGTGTTCTTGTTGGCACTCCTGAAGAAGCTGTTGCACATTTTTTTGAAGTAGCAAGGAGCTTAGAATTTGAATCATTTTTTCAAAATAAAGCTGCTGAAGAAGCTAAACTTGTGATTTGA 1233 0.4469 MIPSINTTITTSALPSSLFLQPGVASFNVISPHFKPKPHLSKFSITCSATSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAAYKKLAEKYPSFRERSEITDLIVEISLQPWKAFRPDGVIIFSDILTPLPALGIDFDIEDVRGPVIQSPIRSEEGLKSLHPIDLDKLRFVGESLKILRKEVGGQAAVLGFVGAPWTIATYIVEGGTTCTYTTIKSMCHTAPHVLKTLLSHLTQAIADYIVFQVESGADCIQIFDSWGGQLPPDMWDRWSKPYIKEIVNLVKKKCPKTPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSDIGVQGNVDPAYLFSPLDALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLEFESFFQNKAAEEAKLVI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0375 410 Hamap Uroporphyrinogen decarboxylase [hemE]. 53 393 IPR006361 GO:0004853|GO:0006779
Lal20g0375 410 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 39 406 - -
Lal20g0375 410 TIGRFAM hemE: uroporphyrinogen decarboxylase 57 390 IPR006361 GO:0004853|GO:0006779
Lal20g0375 410 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 70 79 IPR000257 GO:0004853|GO:0006779
Lal20g0375 410 Pfam Uroporphyrinogen decarboxylase (URO-D) 56 391 IPR000257 GO:0004853|GO:0006779
Lal20g0375 410 CDD URO-D 59 391 IPR006361 GO:0004853|GO:0006779
Lal20g0375 410 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 189 205 IPR000257 GO:0004853|GO:0006779
Lal20g0375 410 Gene3D - 46 394 IPR038071 -
Lal20g0375 410 SUPERFAMILY UROD/MetE-like 56 393 IPR038071 -
Lal20g0375 410 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 39 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0375 Lal-Chr20 3005943 3009832 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0375 K01599 - gmx:100807032 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0375 20 3005943 3009832 Lal20g0375 20 3005943 3009832 ECH