Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0368 ATGGGATCACCATTCAAGCCAAAAAACCCATATAGACTAGAAACCAAGAACTTATCATACAAATTGTGCAGCCAAGTTGATGAGTACAAAAGTCTTTGTTTTGGTTCAAATCCTAGGAGAGGTTCTAAGTACATTTTGAAGGGTATAAATTGTGAGGCAAGACCAGGGGAGCTTACTGCTATTGCTGGACCAAGTGGAGCTGGAAAAACCACACTGCTTGAAATTCTTGCTGGGAGAATATCCCCATGTAAAGTGTCTGGCTATGTGCTGGTCAATCATTTGCCTATGGACGCGAACCGGTTTAGAAGAGCATCCGGTTATGTCACACAGGAAGATGACTTGTTCCCGTCGCTTACGGTTAGAGAGACACTTATGTATAGTGCTATGCTGAGGCTTCCCGGAGGGCGAAAAGTGGCTGCTACCAGAGTTTCAGTGTTGATGAAGGAGCTTGGGTTGGATCATATTGCAGATTCGAGAATCAGTGGTGGATCAAACCATGGCATATCAGGCGGTGAAAAGCGTAGAGTTTCGATTGGTGTTGATTTAGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTAAGGTAATCTCATTGCTTAGACTAATGGCATTTCATCAAGGTAAGACAATTATTTTAACTATCCACCAACCCGGGTTCAGAATCTTAGAGCTATTTGATGGCCTCATTTTGCTTTCTGATGGATTTGTCCTGCATAACGGTTCCTTGAATCTTCTTGAGGTTAGGCTGAAGTTAGCAGGACATCAAATTCCTCACCATGTCAATGTCCTCGAATTCGCCCTTGATGTCATGGAAAGCTTGGTTATACAAACTTCAGAATCTGAGAACAACCAGTTTCTTCTCATGGATAAAGATCACCAAGATCACATGACGAGAATGCAGTACTCCAAGGTTTTCAAAGAAAAGGCTCTTATGTACTCAAATTCTCCCATGGAGGAGATTTTAATCCTAGGACAAAGATTTTGTTGCAACATATTCAGAACTAAGCAACTTTTTTCAGCCAGAGTCATACAGGCATTAGTAGCTGGATTTGTACTAGGGACCATATTTTTAAATGTTGGCAGCAAACAAGATAAAGTAGCATTGCAAACACGAATCGGCTTTTTCGCTTTCAGCCTTACCTTTTTGTTATCATCGACAACAGAAGGGCTTCCTATTTTCTTGGAGGAGAGAAGAACTTTTATGACAGAGACCTCTAGAGGAGCTTACAGAGTTTCTTCCTATGTTTTAGCCAATACCCTTGTGTTCCTCCCTTTCCTTCTAATGGTAGCTTTTCTATACACTACTCCAGTTTATTGGCTAGTAGGATTAAGGAAAGACATTGATGGGTTCCTATACTTCTTCTTAGTGGTTTGGTTGGTCCTCCTCATGTCAAATTCTTTTGTGGCATGTTTCAGTGCTCTAGTGCCAGATTTCATCCTCGGAACCTCGGTGATTGCAGGGCTAATGGGGTCCTTCTTTCTATTTTCCGGGTATTTCATATCAAAGGAAAAAATACCAAGTTACTGGATTTTCATGCACTACTTGAGCCTATTTAAGTATCCATTTGAGTGTCTTATGATAAATGAGTATGGAGGAAATCAAGGGAAAACAAGATGCATAGGAATTAGCAATGGACAATGCATATTACATGGAGTTGAGTTCTTAAGACAGCAAGATGTTACAGAACTAGAAAATAGATCAGCTTTACAACAGTACTAG 1752 0.4075 MGSPFKPKNPYRLETKNLSYKLCSQVDEYKSLCFGSNPRRGSKYILKGINCEARPGELTAIAGPSGAGKTTLLEILAGRISPCKVSGYVLVNHLPMDANRFRRASGYVTQEDDLFPSLTVRETLMYSAMLRLPGGRKVAATRVSVLMKELGLDHIADSRISGGSNHGISGGEKRRVSIGVDLVHDPAVILIDEPTSGLDSASALKVISLLRLMAFHQGKTIILTIHQPGFRILELFDGLILLSDGFVLHNGSLNLLEVRLKLAGHQIPHHVNVLEFALDVMESLVIQTSESENNQFLLMDKDHQDHMTRMQYSKVFKEKALMYSNSPMEEILILGQRFCCNIFRTKQLFSARVIQALVAGFVLGTIFLNVGSKQDKVALQTRIGFFAFSLTFLLSSTTEGLPIFLEERRTFMTETSRGAYRVSSYVLANTLVFLPFLLMVAFLYTTPVYWLVGLRKDIDGFLYFFLVVWLVLLMSNSFVACFSALVPDFILGTSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYLSLFKYPFECLMINEYGGNQGKTRCIGISNGQCILHGVEFLRQQDVTELENRSALQQY 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0368 583 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 574 - -
Lal20g0368 583 Gene3D - 13 270 IPR027417 -
Lal20g0368 583 Pfam ABC-2 type transporter 330 541 IPR013525 GO:0016020|GO:0140359
Lal20g0368 583 Pfam ABC transporter 46 196 IPR003439 GO:0005524
Lal20g0368 583 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 7 574 - -
Lal20g0368 583 Pfam ABC-2 type transporter 226 295 IPR043926 GO:0140359
Lal20g0368 583 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 269 IPR003439 GO:0005524
Lal20g0368 583 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524
Lal20g0368 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 254 IPR027417 -
Lal20g0368 583 SMART AAA_5 55 246 IPR003593 -
Lal20g0368 583 CDD ABCG_EPDR 12 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0368 Lal-Chr20 2956459 2958304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0368 3 252 Calmodulin-binding Proteins AT2G36910 26.538 1.05e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0368 K05681 - gmx:100807754 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0368 20 2956459 2958304 Lal20g0368 20 2956459 2958304 ECH
Lal20g0368 20 2956459 2958304 Lal11g1459 11 17895528 17897476 LSH