Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1459 ATGGGATCACCATTCAAGCCAAATGCATGCACCAGAAAAAACCCATACAGATTAGAGACAAAGAACTTATCATACAAATTGTGCAGCCAGTTTGATGAGTATAAAAGTCTTTGTTTTGGTTTGAATCCTAGGAGAGGTTCTAAGTACATTTTGAAAGATGTGAATTGTGAGGCAAGGCCAGGTGAGCTTACTGCTATTGCTGGTCCAAGTGGAGCTGGAAAAACTACTCTGCTTGAAATTCTTGCTGGGAGAATATCCCCATGTAAAGTGTCTGGCCAAGTGTTTGTCAATCATAGGCCTATGGTCGTGGACCGGTTTCGAAGAGCATCGGGTTTTGTTACACAGGAAGATGCTTTGTTTCCATCACTTACAGTTAGAGAGACACTCATGTATAGTGCTATGCTGAGGCTTCCCGTGGTACGAAAAGTGGCTGCTACCAGAGTTTCAGAATTGATAAAGGAGCTTGGGTTGGATCATATTGCTGATTCGAGGATCGGTGGTGGATCGAATCATGGCATATCAGGTGGTGAAAGGCGTCGAGTTTCTATTGGTGTTGATTTAGTTCATGATCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTAAGGTAGTCTCATTGCTTAGACTAATGGCATTTAATCAAGGTAAGACAATTGTTTTGACAATCCACCAACCTGGGTTCAGAATCTTAGAGCTATTTGATGGCCTTATTTTGCTTTCTGATGGATTTGTCATGCATAATGGTTCATTGAATCTTCTTGAGGCTAGGCTCAAGTTAGCTGGGCATCAAATTCCTCACCATGTCAATGTCCTCGAATTCGCCCTTGATGCCATGGAAAGCTTGGTTATACAAACATCAGACTCTCAGAATAGCCAGTTTCTTCTGATAGACAAAGAGCACCAAGATCACATGATGAGGATGCAATACTCCAAGGTTGTCAAAGAAAAGGGTCTTTTGTACTCAAATTCTCCAATGGAGGAGATTTTGATCCTAGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTTTTTGCTGCCAGAGTTATACAGGCCTTAGTAGCTGGATTTATACTAGGGACCATATTTTTGAATGTTGGCAACAAACAAGATCAAGTAGCATTGCATGCAAGGAGTGGCTTTTTTGCTTTCAGCCTTACCTTTTTGTTATCATCATCAACAGAAGGGCTTCCTATTTTCTTGGAAGAGAGAAGAACTTTTATGAGAGAAACTTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAACACCCTTGTGTTCCTTCCTTTCCTTCTAATGGTTGCTTTTCTATACACTACTCCAGTGTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGCTTCCTTTACTTCTCATTAGTGGTTTGGTTGGTCCTCTTCATGTCAAATTCTCTAGTGGCTTGTTTCAGTGCTCTAGTGCCAAATTTCATCCTTGGAACCTCAGTGATTTCAGGGATATTTCATATCAAAGGAAAAAATACCAAGTTACTGGATTTTTATGCACTATTTGAGCCTTTTCAAATGTCACAGAACCACAAAATAGATCAAGTTTACAATAGTGGTAGCCTAATAAGCATGGCCATGTTTATTGTCCAATAA 1653 0.4017 MGSPFKPNACTRKNPYRLETKNLSYKLCSQFDEYKSLCFGLNPRRGSKYILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRISPCKVSGQVFVNHRPMVVDRFRRASGFVTQEDALFPSLTVRETLMYSAMLRLPVVRKVAATRVSELIKELGLDHIADSRIGGGSNHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALKVVSLLRLMAFNQGKTIVLTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHQIPHHVNVLEFALDAMESLVIQTSDSQNSQFLLIDKEHQDHMMRMQYSKVVKEKGLLYSNSPMEEILILGQRFCCNIFRTKQLFAARVIQALVAGFILGTIFLNVGNKQDQVALHARSGFFAFSLTFLLSSSTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLMVAFLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLFMSNSLVACFSALVPNFILGTSVISGIFHIKGKNTKLLDFYALFEPFQMSQNHKIDQVYNSGSLISMAMFIVQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1459 550 CDD ABCG_EPDR 33 256 - -
Lal11g1459 550 Pfam ABC-2 type transporter 231 300 IPR043926 GO:0140359
Lal11g1459 550 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Lal11g1459 550 Pfam ABC-2 type transporter 335 505 IPR013525 GO:0016020|GO:0140359
Lal11g1459 550 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 2 505 - -
Lal11g1459 550 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524
Lal11g1459 550 Gene3D - 17 282 IPR027417 -
Lal11g1459 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Lal11g1459 550 SMART AAA_5 60 251 IPR003593 -
Lal11g1459 550 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 505 - -
Lal11g1459 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1459 Lal-Chr11 17895528 17897476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1459 43 257 Calmodulin-binding Proteins AT2G36910 25.455 3.39e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1459 K05681 - gmx:100776372 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1459 11 17895528 17897476 Lal11g1459 11 17895528 17897476 ECH
Lal20g0368 20 2956459 2958304 Lal11g1459 11 17895528 17897476 LSH