Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0362 ATGTCTTATTACACTCTCTTCCTCTCTTTTACACTCTTAATAATCCTATGCGGTCACCTCCACGCTAGTGATCTACTATCAGATGGGGTATCTAATGATACGTTTCTGAGACTCCCATCATCAAATGAGGTGGAACCTTCTTCCACGTGTGAGGAAACCTATGGATTCTTACCGTGCACCACAACCGTATTTGGAAACATGTTTCTGATAATAGTGTATGGTTTTCTGATGTACACCGCTGCTACGTATTTATCAGCTGGTAGCGAGCTTTTGCTTGAGATCTTGGGACCTGGCATCGTTGGTGGATTGTTTCTTCCTATTCTTGGTGCTCTTCCAGATGCTATGCTCATTCTCGTATCTGGACTTTCAGGTACTAATGAAACTGCTCAAAGTCAGGTCTCTGTTGGAATGGGTCTGCTGGCTGGGTCAACAGTTATGCTTCTGACTGTAATATGGGGGACCTGTGTAATTGTTGGGAAGTGTGACCTTGAGGGTTCAATTGCAATAGATTCACGTGATACCAGGGGATTTCATTTAACCAGTTCTGGTGTTAGTACTGATATTTGGACTAGTTATTCTGCTAGGATTATGGTTTTATCCGTCCTTCCATTTTTGATCGTTCAGTTACCCCAATTGCTCAATTCAACTTCTGGAAGGCACTACGCTGTTTTGATAGCTCTTGTTGTCTCCATCTGTTTACTAATTATGTATTGCCTGTACCAGATTTTCCAGCCCTGGATACAGAGGAGAAAACTTTCATATGTTAAACACAAACATGTAATCTTAGGACTTTTGAGACATTTGAAGCAACGTGCATTGGGAAGGCTGCTAACAGAGAATGGTGAACCTAACGTACAAATTATAGAAAAGTTGTTTGATACAATTGATGAGAATAAGGATGGTGAACTTTCTCACGGTGAATTGAAAGCGCTGGTTGTTGGAATTCAATTTGAGGAAGTTGACCTGGATCATGAAGATGCTGTGATAAAATTAATGCATGACTTTGATGTTTCGGGTAATAGTCGTGTTGATAAAAAAGAATTTATTGATGGCACTTGTAGATGGCTTCAAAAGGCTAAGGGTTCTCGAGTTGCATCTGGTGATGATGGTGCACACACAATGAAGTTTTTAAGTGACTTTCACGATGAAACAAGAAGGGAGCATGATCTTCTGGATGTGGGGGGTCAAAATGATGAAGTTGATGAGGGTGTTGGAAATGCTAGATGGACTTCCATCAAAGCAGTGCTTCTGCTGGTGCTGGGTTCTCTTATTGCTGCTGCATTTGCTGATCCTCTGGTTGACGCAGTTGATAACTTTTCTAATGCTACAAGTATTCCTGCTTTTTTCATTTCCTTCATTGCTCTGCCTTTGGCAACCAATTCAAGTGAAGCAGTATCAGCAATAATTTTTGCTAGTCGAGATAAAAGGCAAACTGCCTCACTAACATTTTCGGAGCTATATGGGGCAGTGACAATGAATAATGTGCTTTGCCTCTCAGTGTTCTTGGCTCTGGTTTATGCAAGGGGATTAACATGGGATTTCTCTTCAGAAGTGTTGGTTATTCTGGTTGTCTGTGTTGTAATGGGTGGCATTGGCAGTTTCAGGACAACATTCCCTCTATGGACATCTATAGTGGCTATCCTTCTTTATCCCTTTTCCTTGGCATTGGTCTATGTTCTTGATTATGTATTTGGTTGGTCATAG 1704 0.412 MSYYTLFLSFTLLIILCGHLHASDLLSDGVSNDTFLRLPSSNEVEPSSTCEETYGFLPCTTTVFGNMFLIIVYGFLMYTAATYLSAGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGTNETAQSQVSVGMGLLAGSTVMLLTVIWGTCVIVGKCDLEGSIAIDSRDTRGFHLTSSGVSTDIWTSYSARIMVLSVLPFLIVQLPQLLNSTSGRHYAVLIALVVSICLLIMYCLYQIFQPWIQRRKLSYVKHKHVILGLLRHLKQRALGRLLTENGEPNVQIIEKLFDTIDENKDGELSHGELKALVVGIQFEEVDLDHEDAVIKLMHDFDVSGNSRVDKKEFIDGTCRWLQKAKGSRVASGDDGAHTMKFLSDFHDETRREHDLLDVGGQNDEVDEGVGNARWTSIKAVLLLVLGSLIAAAFADPLVDAVDNFSNATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILVVCVVMGGIGSFRTTFPLWTSIVAILLYPFSLALVYVLDYVFGWS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0362 567 PANTHER SODIUM/CALCIUM EXCHANGER NCL 12 564 - -
Lal20g0362 567 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 564 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lal20g0362 567 ProSiteProfiles EF-hand calcium-binding domain profile. 283 318 IPR002048 GO:0005509
Lal20g0362 567 CDD EFh 288 351 IPR002048 GO:0005509
Lal20g0362 567 Gene3D - 95 265 IPR044880 -
Lal20g0362 567 SUPERFAMILY EF-hand 269 492 IPR011992 -
Lal20g0362 567 Pfam Sodium/calcium exchanger protein 68 244 IPR004837 GO:0016021|GO:0055085
Lal20g0362 567 Pfam Sodium/calcium exchanger protein 414 558 IPR004837 GO:0016021|GO:0055085
Lal20g0362 567 SMART efh_1 287 315 IPR002048 GO:0005509
Lal20g0362 567 SMART efh_1 327 355 IPR002048 GO:0005509
Lal20g0362 567 Gene3D - 266 387 - -
Lal20g0362 567 ProSitePatterns EF-hand calcium-binding domain. 296 308 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0362 Lal-Chr20 2903908 2909238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0362 22 567 EF-hand Containing Proteins AT1G53210 66.727 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0362 - - gmx:100809896 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0362 20 2903908 2909238 Lal20g0362 20 2903908 2909238 ECH