Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0340 ATGCAGGCAAGTACCAGTTCTGATGGCACAGTTATACCTCTACTATTAAGAGAACATGAACAAGAACAAGAAAACACAAAACCCCATGTTGGAGGATGGTGTAACAAACTCATTGATTTAGAGGAAGCCATGCATCAACTAAAGTTTTCACTACCAATGATTCTTACTAACTTATTCTATTACTTAATCACTTTGGTTTCTGTTATGATTGCTGGTCACTTTGGTCAACTTCAACTTGCTGGTTCTACTTTGGCTAACTCATGGTTCAGTGTCACTGGCTTGGCAGTTATGGTTGGTTTAAGTGGGGCATTGGAAACACTATGTGGGCAAGGATTTGGTGCAAAAGAATACCAAATGTTGGGAATTTATCTACAAGCTTCTTGCATTATATCTCTTATCTTCTCTATCATCATATCCATTCTATGGTTCTATACAGAACACATCCTAGTTTTGCTTCATCAATCTCCTGAAATAGCAAGAACAAGTGCACTTTATATGAAGTATTTTGTGCCAGGAATATTTGCATATGGCTTCTTGCAGAACATACTGAGATTTCTTCAGACACAATCTATTGTAACTGAGTTGGTTTTCCTCTCAGCTATTCCATTATTGGTTCATGTTGTTATTGCATATGCCTTGGTTCATTGGACTAGTCCGAGTTTTATCGGTGCTCCAGTCGCGGCTTCAATTTCGCTGTGGATATCGGTTGTATTGTTAGCCTTTTATGTTATCTATGCAAAGAAATTCAACATGACATGGGAAGGATTTTCACTTCATTCATTCCATTATGTCTTTGCATACTTGAAACTAGCTTTGCCCTCTGCAGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAATTATGGTTCTGCTGGCTGGATTATTGCCTAACCCACAAGTAACTACTTCATTGATTGCAATATGCACAAACACAGAATTAATTGCATACATGATCACTTATGGTCTCAGTGCAGCTGCAAGCACAAGGGTCTCCAATGAATTAGGAGCAGGCTATCCGGATAGAGCAAAACATGCAATGAAAGTCACTCTGAAGCTATCTCTCTTCCTTGGCCTATGCTTTATTTTGACACTAACATTTGGTCATAATATATGGATTCAATTGTTCACTAGCAGTTCTAAAATCAAAGAAGAGTTTGCATCAGTGGCACCATTGCTTGCAATTTCTATACTATTAGATTCAGTGCAAGGTGTCTTATCAGGGGTGGTAAGAGGGTGTGGTTGGCAGCACTTGGCTGTTTATGTTAACCTTGTAACTTTTTACCTTATTGGTTTGCCAATATCATGTCTACTTGGATTTAAGACCAATTTGCAGGCTAAGGGTTTATGGATTGGTTTGATTTGTGGGCTAGCTTGCCAAACTGGGGTTCTCTTAATTTTCACATGGGGTGCCAAATGGACTAAACTCAATAGCCATGATACAACAATCAAACTTTAA 1455 0.3856 MQASTSSDGTVIPLLLREHEQEQENTKPHVGGWCNKLIDLEEAMHQLKFSLPMILTNLFYYLITLVSVMIAGHFGQLQLAGSTLANSWFSVTGLAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSIIISILWFYTEHILVLLHQSPEIARTSALYMKYFVPGIFAYGFLQNILRFLQTQSIVTELVFLSAIPLLVHVVIAYALVHWTSPSFIGAPVAASISLWISVVLLAFYVIYAKKFNMTWEGFSLHSFHYVFAYLKLALPSAAMVCLEYWAFEIMVLLAGLLPNPQVTTSLIAICTNTELIAYMITYGLSAAASTRVSNELGAGYPDRAKHAMKVTLKLSLFLGLCFILTLTFGHNIWIQLFTSSSKIKEEFASVAPLLAISILLDSVQGVLSGVVRGCGWQHLAVYVNLVTFYLIGLPISCLLGFKTNLQAKGLWIGLICGLACQTGVLLIFTWGAKWTKLNSHDTTIKL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0340 484 CDD MATE_eukaryotic 42 474 IPR045069 GO:0042910|GO:1990961
Lal20g0340 484 TIGRFAM matE: MATE efflux family protein 52 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal20g0340 484 PANTHER PROTEIN DETOXIFICATION 23 474 - -
Lal20g0340 484 Pfam MatE 273 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal20g0340 484 Pfam MatE 52 211 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal20g0340 484 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0340 Lal-Chr20 2745270 2751875 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0340 K03327 - gmx:100816310 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0340 20 2745270 2751875 Lal20g0340 20 2745270 2751875 ECH