Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0330 ATGGACCCTGACGTCATCGAAGTTCCTCCCCCAATTCCTCACCCTTCAAGGTTGGCGAAGCAGAAACAAGTCATTTTACATGATGTGATTGACATTGACGACGACGATGACTCTGATGAATTAATGATAATTGGTGAGAAATTTAGTCAAAGTAATAAGGGGAAGATGATTGAAGCCATTCATGGTGATCATCATGTCATGGAAATGCCTGGTTTTAATTTTTGCCAGCCTGATGTAGGAAAATTTGAACCAGCTAGCAAGATTGAGTCTTCACATGATCTAATCAATGTTGATGGCCAATTTCATGATCCATCATATAATGATGACTTTGTCGATTTGTTTTCGGAAGTAGACCCGTATGCTTTCTTACAGGCACACTTTGACAATGTGGATATACCACCTGGAATTGAGGCACCGATACCTTGGGTGTCAGGATATAACCTACTTTCGAAAAAGTCTGGGGATTCTTCGTTGTATCCTTGGTCTCATATGCAACCAGGTGCTAACAATTCACACCTGTCAGGCTCATCTCAGCCTTCTTTGTCATTAGAGCATACTAACCCTAGAACCCAAGGGTCTTCGGTGGGTAGTTCTAATTTGCAGTTCAAGTTTGGTAATGTTGATCACTCTTCTGGAATAGGATTGACTTCTCCTCACTTATTTTCTCAGTCTACCCATAGTACGAAGAAATCAACTATTTCACAGCGCAGAGGGCGCAATTTAAATCTGTCGTTAGGAGTAGAGTCATCTAAATCTCAGGCAGTTTCTGGATCTTTTCAGAGTATAAAGCAGCCTAGCATTTTTGGCTCTTCAACTGACCATGGTTTCATTGATAATTCAGAGGCCATGATGCTGCCACCTGCTAAGAAGTTCATTGTTAGTAGCAGTTCTTACCATCCACATTTCGTTGGACATGATGGATCATTTCATCCTTCTGGAATTGTGTCAGAAAGCCCTTGGTTGATTAATTCTCATATTTTTAAGCCATCATTTACTAATCAAATAGCTAATCCAAATTTGTATCCACCTGATCCTCTTCATACCCCTCCCATGCACATGTTCGGAAACGCCCAGATTCATAATTCTGCCAGCAATGGATATAATGGAACAGCAGTGGATAGCTCGATTCCAACAATCCCTGACGCAGCAAGATATGAAATTCTAAGGAAATTCCAAAGTTTTAAACAATTTGACACCGTCGAAGACACTTCAGACCATCATTTCATTCGCCAAAATTCTTCCATGAAACATCATCCAAAGATTTGGGCTAAAAAAATCCAGGAAGAATGGAAGATTTTGGAGAAGGATTTGCCTGATACCATATTTGTCAGAGTTTATGAATCAAGGATGGATCTTTTGAGGGCTGTGATTATTGGAGCAGAAGGGACCCCTTATCATGATGGGCTTTTCTTCTTTGATGTTTTCTTTCCCAGCGCCTATCCCAAAGTACCACCGCAAGTCCACTACCACTCTGGAGGTCTTCGGCTAAACCCAAATCTGTATCATTGTGGCAAAGTATGCCTTAGTCTACTTAACACTTGGTCTGGCAGCAAGGATGAGAAGTGGGTCCCAGGTGTTTCAACTATTTTACAGGTTCTAGTCTCAATTCAAGGCCTGATCTTGAATACAAAGCCTTACTTTAACGAACCTGGATATGAACGTACTAGTGGTACAAAACATGGCGAATCGAGTTCCTTGAAGTATAACGAGGACACATTCATTCTATCATTGAGGACCATGGTGTATATGATGAGAAAGCCTCCTAAGCATTTTGAAGACTTTGTCGTTGGTCATTTCTACAATCGAGCTCGCGATATTCTGGTGGCTTGTAAAGCATACATGGAAGGTGCTCAAGTTGGTTGTTTGGTCAAAGGTGGGGTTCAGGATGTTGATGAGGGTGACAAAACCTGCTCAAAGCAGTTTAAGGATTCACTAACTGGATATGTGAATATGATTGTCACTGAGTTTGCAAAAATTGGAGTTAAGCACTTGCAACTTCCTATCTCCAACACTAACACTGAACAAGCCATTGGGTGGATTGCCTAA 2046 0.412 MDPDVIEVPPPIPHPSRLAKQKQVILHDVIDIDDDDDSDELMIIGEKFSQSNKGKMIEAIHGDHHVMEMPGFNFCQPDVGKFEPASKIESSHDLINVDGQFHDPSYNDDFVDLFSEVDPYAFLQAHFDNVDIPPGIEAPIPWVSGYNLLSKKSGDSSLYPWSHMQPGANNSHLSGSSQPSLSLEHTNPRTQGSSVGSSNLQFKFGNVDHSSGIGLTSPHLFSQSTHSTKKSTISQRRGRNLNLSLGVESSKSQAVSGSFQSIKQPSIFGSSTDHGFIDNSEAMMLPPAKKFIVSSSSYHPHFVGHDGSFHPSGIVSESPWLINSHIFKPSFTNQIANPNLYPPDPLHTPPMHMFGNAQIHNSASNGYNGTAVDSSIPTIPDAARYEILRKFQSFKQFDTVEDTSDHHFIRQNSSMKHHPKIWAKKIQEEWKILEKDLPDTIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSAYPKVPPQVHYHSGGLRLNPNLYHCGKVCLSLLNTWSGSKDEKWVPGVSTILQVLVSIQGLILNTKPYFNEPGYERTSGTKHGESSSLKYNEDTFILSLRTMVYMMRKPPKHFEDFVVGHFYNRARDILVACKAYMEGAQVGCLVKGGVQDVDEGDKTCSKQFKDSLTGYVNMIVTEFAKIGVKHLQLPISNTNTEQAIGWIA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0330 681 CDD UBCc 424 550 IPR000608 -
Lal20g0330 681 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 18 665 - -
Lal20g0330 681 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 18 665 - -
Lal20g0330 681 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 421 581 IPR000608 -
Lal20g0330 681 MobiDBLite consensus disorder prediction 169 197 - -
Lal20g0330 681 SMART ubc_7 424 581 - -
Lal20g0330 681 SUPERFAMILY UBC-like 407 590 IPR016135 -
Lal20g0330 681 Pfam Ubiquitin-conjugating enzyme 426 556 IPR000608 -
Lal20g0330 681 Gene3D Ubiquitin Conjugating Enzyme 382 660 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0330 Lal-Chr20 2659731 2664767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0330 381 665 Miscellaneous Gene Families AT2G33770 51.916 1.76e-90 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0330 K10581 - ccaj:109805727 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0330 20 2659731 2664767 Lal20g0330 20 2659731 2664767 ECH