Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0279 ATGGCGCCAAAACGAAAAACTTCTTTTCCAATTTCCATCGGTAACTGCGACATTGCTGTCGAGGCTAACAATTTCACCTGCAACTCCGATTCTAACGCCGCCGTAATTTCCATTACTAGAAGCGGCAAGATCAAAGTTTCAGTGAAAAAAGATGTTTCTAAAAACCATGGACATAACTCTGAGGATTTTTGTTCTGAAGATAAAGATCACAAGTTCGTGCTTGTTAGTTCTAAGGATGTTGATTTTACTAGCAAATCCTACCTTCAGGAAGTATTACATATGTATATGACAGAGCTACCTGCTATGAATTATGCTGCGAATACTGGAAAGAAATCAAAGTTTCTTGAGAGATGTGTGACTAATCGGAAGTATCGTACACTACTCTTGACATCCAGTTTTGTTGAAAATCCCAGAAAGGTTATGGCTGCAATTACATATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAGCACAATCTACCAGCGGAAGGGTTTTGGTCATCTGTTGTTTCTAGAGTTAAGGAAAAGACTTGAAAGTGTTGGCATTCGGTCTATTCTCTGTTGGGGAGACGAAGAATCTAAAGGATTTTGGATTAAACAGGGTTTTATACCAATAGCGCAGGTGGATCCTAAAGGCAAAGCCCGCAAGTTACCCGTAAAAGCTGATATTCGCAAATCATTATGTTTTCCTGGTGGTTCAACTCTCATGGTTTTCCATACAAGGAATGAATTATTAGCTAATGCTACTAACTCTATGAAGGGTCTCTCCTCGCCGCTTCCTAATTCTTTGCCATCTGCCATTGCTGAAAATGAGAAGTCTGAGTTTTCAGGAGAGTTAGCAGCTGATTTGAATTTTTCGAATCAATCTTCCCATAGAACAGAAAATACAGATAAAAGTCAACCTGAAGTTTTGTTGAAAGATGGATCTTCAAGAGATTACAACAAAACAAATGGGTTTGCCAATCACAATCGTAAGCATTGCTGCAGTGACATTATTCCTTCTTCTGGAGAAAATGATGATAGAGATGTCACTGGTGCAGAATCTTCACGTAACACTAACGTGAAGTATTGTTCTCGGTCTACAAATAGTGCCAAGCGGGTCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGATTAAGCCAGTTGGTTGACTGTCAATCAGATTCTAGCTGGGGTTTTATTTCAGAGGCTGATAGAGCCAATCCCTGTTTTGTGGAAGGTCATCATGTTGATCCTTTGATCACAAAAAAATCTGAAAAGTTTAAATGTGATAATTTGCATTTAGAAGCTCCAATCAACAAAGAACTGCAATCAACTAAAAGACGTTGTAGAATAATGTTGATGGATATTGCTGATGATGCTAAAAGAACACAGCTTACAAGGGTGATTGAAGACCTTGGTGGAACTGTTTCCTATGATGGAAGCACAGCCACACATGTTGTCACAGGAAAAGTTAGAAAAACACTGAATTTTTGCACTGCTCTCTGTTCAGGGGCTTGGGTGGTCTCATCAAGTTGGTTGAAAGAAAGTTACCGTGAAGGCAGATTTGTTGATGAGTTGCCTCACATACTAGATGATAAGGAGTATCTGTTGAAGTACAAATCTGATTTAAAACGTGCAATTTTCCGTGCAAAAGCTAGTCCCCGTGCGTTGTTTAAGGGGTATAATGTATGTATTGCAGCTCATCTTCAAACTCCTACGAAAACACCATCTGCTATAGTCATATCTGCTGGTGGTAATGTTATTCGTGGACTTGAAAATGTAATTGAAGCATCGACGACAATCTTTGTGACATGCGAAGAAGATACAGAAGAAGCAATGATGGCTGCAAAGAAAGGTATACCGACTTTCAGCAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCTCAATTTGCAGAATCCTTATAA 1962 0.3976 MAPKRKTSFPISIGNCDIAVEANNFTCNSDSNAAVISITRSGKIKVSVKKDVSKNHGHNSEDFCSEDKDHKFVLVSSKDVDFTSKSYLQEVLHMYMTELPAMNYAANTGKKSKFLERCVTNRKYRTLLLTSSFVENPRKVMAAITYQIIPADTEYAEIPLAAVSTIYQRKGFGHLLFLELRKRLESVGIRSILCWGDEESKGFWIKQGFIPIAQVDPKGKARKLPVKADIRKSLCFPGGSTLMVFHTRNELLANATNSMKGLSSPLPNSLPSAIAENEKSEFSGELAADLNFSNQSSHRTENTDKSQPEVLLKDGSSRDYNKTNGFANHNRKHCCSDIIPSSGENDDRDVTGAESSRNTNVKYCSRSTNSAKRVWEASLSSLKSKRVKGLSQLVDCQSDSSWGFISEADRANPCFVEGHHVDPLITKKSEKFKCDNLHLEAPINKELQSTKRRCRIMLMDIADDAKRTQLTRVIEDLGGTVSYDGSTATHVVTGKVRKTLNFCTALCSGAWVVSSSWLKESYREGRFVDELPHILDDKEYLLKYKSDLKRAIFRAKASPRALFKGYNVCIAAHLQTPTKTPSAIVISAGGNVIRGLENVIEASTTIFVTCEEDTEEAMMAAKKGIPTFSSEWFMNCVMRQELDLEASQFAESL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0279 653 MobiDBLite consensus disorder prediction 302 316 - -
Lal20g0279 653 CDD BRCT_PAXIP1_rpt6_like 562 643 - -
Lal20g0279 653 Gene3D BRCT domain 560 652 IPR036420 -
Lal20g0279 653 SMART BRCT_7 560 640 IPR001357 -
Lal20g0279 653 SMART BRCT_7 448 525 IPR001357 -
Lal20g0279 653 SUPERFAMILY BRCT domain 558 642 IPR036420 -
Lal20g0279 653 MobiDBLite consensus disorder prediction 294 323 - -
Lal20g0279 653 ProSiteProfiles BRCT domain profile. 558 642 IPR001357 -
Lal20g0279 653 MobiDBLite consensus disorder prediction 338 364 - -
Lal20g0279 653 Pfam BRCA1 C Terminus (BRCT) domain 461 521 IPR001357 -
Lal20g0279 653 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 653 - -
Lal20g0279 653 ProSiteProfiles BRCT domain profile. 456 535 IPR001357 -
Lal20g0279 653 Gene3D BRCT domain 442 559 IPR036420 -
Lal20g0279 653 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 135 215 IPR016181 -
Lal20g0279 653 Gene3D - 69 222 - -
Lal20g0279 653 SUPERFAMILY BRCT domain 453 539 IPR036420 -
Lal20g0279 653 CDD NAT_SF 134 195 - -
Lal20g0279 653 PANTHER N-ACETYLTRANSFERASE 4 653 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0279 - - gmx:100806087 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0279 20 2083352 2089389 Lal20g0279 20 2083352 2089389 ECH