Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0227 ATGGGCACCAATTCGTTACCTTCAAAGTCTTCTCACGATCTAGACGAACAGATCTCGCAGTTAATGCAGTGCAAACCACTCTCCGAGCAACAGGTTAAAGTTTTATGTGAGAAGGCTAAGGAGATTTTAACGGGTGAGAGTAATGTCCAGGAAAATGGAGAATGGATAGGGATGGTCAGAGCATTGCAGAGATGGATGGTGGTTGCCAGAGATGACGATGGTGGAGTTGATGATAATAAATCAACAGTTTCGAAAGTCCAGCTATGCTCTGACTCAACCTGGGGCATAAATGAGTTGATATTTTCCAGTTTTGTCTTAGTTTCCTCTTATTTGGGTTATTATCCTGATGACAATACTCAATTGCTTTTGATTCCTATTTTGTGGAAGGAGGATCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATACATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGAAAGTGTCCAGACACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTGACACTCCTTGTGGCACTGAAAGTGCGGTATCATCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGCCAGATTACCCAAGTATACGGATTTTACGATGAATGCCTAAGAAAGTATGGTAGTGCTAATGTCTGGAAGATCTTTACTGACCTTTTTGATTTTTTGCCATTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCCCCTTCAATTGAGACCCTTGATAACATAAGGAACTTTAATCGTGTTCAAGAGGTTCCTCATGAAGGGCCTATGTGTGATCTGTTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATACACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGCCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTATTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGAGCCACACGTTCATCCAGTTTGAACCTGCTCCAAGGAGAGGAGAACCTGATGTGACGCGTAGAACGCCTGATTACTTCCTCTAA 1185 0.4253 MGTNSLPSKSSHDLDEQISQLMQCKPLSEQQVKVLCEKAKEILTGESNVQENGEWIGMVRALQRWMVVARDDDGGVDDNKSTVSKVQLCSDSTWGINELIFSSFVLVSSYLGYYPDDNTQLLLIPILWKEDPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFLPLTALVESEIFCLHGGLSPSIETLDNIRNFNRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKSHTFIQFEPAPRRGEPDVTRRTPDYFL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0227 394 ProSitePatterns Serine/threonine specific protein phosphatases signature. 199 204 IPR006186 GO:0016787
Lal20g0227 394 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 131 394 - -
Lal20g0227 394 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 51 - -
Lal20g0227 394 SUPERFAMILY Metallo-dependent phosphatases 126 379 IPR029052 -
Lal20g0227 394 Pfam Calcineurin-like phosphoesterase 136 327 IPR004843 GO:0016787
Lal20g0227 394 CDD MPP_PP2A_PP4_PP6 13 378 - -
Lal20g0227 394 Gene3D - 7 394 IPR029052 -
Lal20g0227 394 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 131 394 - -
Lal20g0227 394 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 51 - -
Lal20g0227 394 SMART pp2a_7 113 378 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 136 163 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 165 192 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 198 222 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 233 259 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 262 289 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 318 338 IPR006186 GO:0016787
Lal20g0227 394 PRINTS Serine/threonine phosphatase family signature 340 356 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0227 Lal-Chr20 1593791 1603960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0227 135 324 Calmodulin-binding Proteins AT5G63870 35.683 9.02e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0227 K04382 - tcc:18599178 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1303 11 16686804 16692393 Lal20g0227 20 1593791 1603960 LSH
Lal1g1711 1 19559311 19565018 Lal20g0227 20 1593791 1603960 LSH