Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1303 ATGGGCGCCAATTCGTTACCGTCTGAATCTTCTCACAACCTTGACGAGCAGATCTCCCACCTCATGCAATGCAAACCACTTTCCGAGCAACAGGTTAAAGTTTTATGTGAGAAGGCTAAGGAGATTTTAACAAATGAGAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAATTTCATGATCTTGCTGAACTATTTCGAATTGGAGGAAAGTGTCCAGACACTAACTACTTGTTTATGGGCGATTATGTGGACCGTGGTTATTATTCAGTTGAGACTGTGACACTCCTTGTGGCACTGAAAGTGCGGCATCCTCAACGTATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACCCAAGTATATGGATTTTACGATGAATGCCTAAGAAAGTATGGTAGTGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCGTTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCCCCTTCAATTGAAACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGGTACACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGAGGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACTATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAGGAGCCACACATTTATCCAGTTTGATCCTGCTCCAAGGAGAGGAGAACCTGATGTCACGCGTAGAACCCCTGATTATTTCCTATAA 942 0.4268 MGANSLPSESSHNLDEQISHLMQCKPLSEQQVKVLCEKAKEILTNESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRHPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMEGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRSHTFIQFDPAPRRGEPDVTRRTPDYFL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1303 313 Gene3D - 7 313 IPR029052 -
Lal11g1303 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Lal11g1303 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Lal11g1303 313 SUPERFAMILY Metallo-dependent phosphatases 10 298 IPR029052 -
Lal11g1303 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Lal11g1303 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 313 - -
Lal11g1303 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Lal11g1303 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Lal11g1303 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1303 Lal-Chr11 16686804 16692393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1303 35 243 Calmodulin-binding Proteins AT5G63870 34.661 1.50e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1303 K04382 - thj:104821037 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1303 11 16686804 16692393 Lal1g1711 1 19559311 19565018 LSH
Lal11g1303 11 16686804 16692393 Lal20g0227 20 1593791 1603960 LSH