Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0177 ATGGCAGGGGTGGTAAATAATGGGAGTGAAAGGGAATTAGCAGGAGTTAATGGTTTTCTGCAAGTTTCGGAGACTTCTACTAGTGCTACTGGCTCTGCTGGGGATGTTGTTAATGAAGCCGGTAAGACTGACAGTCTTTCTTTTGCCAATGTCCTGCGTTCAAGGAACAAGTTTGTCGATGCACTCGCTCTGTATGAGCGTGTCCTAGAGAATGATAGTGGAAATGTAGAGGCCCTCATTGGAAAAGGGATATGCCTGCAGATGCAGAGCATGGGAAAGCTTGCTTTTGACAGTTTTTCTGAGGCTATCAGGTTGGATTCTCAAAATGCTTGTGCCCTCACGCATTGTGGCATCCTGTTCAAAGAAGAGGGGCGCTTGTTGGAGGCAGCCGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCCTACAAAGTAGCTTCTGAACTCCTTGCCATTGTTTTAACGGATATCGGTACCAACATAAAGCTTGCAGGAAACACTCAGGAGGGAATTCAAAAATATTTTGAAGCCATCAAAACAGATCCACATTATGCTCCAGCGTACTATAACCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTTACTTTCTATGAAAAGGCTGCAACAGAGAGGCCTATGTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTAGGATCAGCTATTACTTGTTATGAGAGGTGTTTAGCTGTTTCACCTAACTTCGAGATTGCAAAGAACAATATGGCTATAGCTTTGACTGATTTAGGGACAAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGGCTTTTTATAAGAAAGCTCTGTATTATAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCCTATGGTGAGATGCTCAAGTTTGATATGGCAATTGTATTCTATGAACTTGCATTTCACTTCAATCCACATTGTGCCGAAGCTTGCAACAATCTAGGTGTTATATATAAAGATCGTGACAACCTTGATAAAGCTGTAGAATGTTATCAGCTTGCTTTGTCAATCAAACCTAACTTCTCACAGTCATTAAATAACCTTGGTGTTGTATACACTGTCCAGGGTAAAATAGACGCTGCTGCAATTATGATTGAAAAAGCTATCACTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGTTGGGGAAATCACTCAAGCAATTAATGCTTATGAGCAGTGTCTTAAGATTGACCCCGATTCTCGGAATGCTAGCCAGAACCGCTTGCTTGCAAGGAATTACATAGATGAAGGAAATGATGACAAACTGTTTGAGGCTCACAGGGACTGGGGTAGGCGATTTATGAGATTATATTCACAGTACACTTCTTGGGACAACCCAAAAGACCCTGAACGACCTCTTGTAGTCGGATACATATCTCCCGATTATTTCACTCATTCAGTATCATATTTCATAGAAGCTCCCCTTGTCTATCATGACTACACCAAGTATAAAGTGATTGTTTATTCAGCAGTTGTCAAGGTCATGGGTCCAAATCCTGGAAACAACCTATTTGCTTGCAAGGATAAGGATAAGGCTACGTGCATCTATCCTCCCCAGACCCCAATAGATTCTTTTGAAATGGTTGTTGCCAGAGTTTGCCAAATGACCAATTGTCTAGAGACTCTCCGAGATGGCTTGGCACCAATGATTTGCTGTGTTAACATTTTGACTTTGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTCTTAAGTAGGGGTGGGATCTGGAAAGATATTTATGGGGCTGATGAAAAGAAGGTGGCTGACATGGTTAGAGAAGATCAAATTGATATTTTGGTAGAACTTACTGGTCATACTGCGAACAATAAATTGGGAATGATGGCATGTCGACCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTTCAATTGATTATAGAATCACTGATTCCTTGGCAGACCCTCCCAAAACAAAACAGAAACATGTTGAGGAGTTAGTTAGATTGCCCGAGTGCTTCCTTTGTTACACTCCTTCCCCCGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTTTCTAATGGCTTCATCACGTTTGGTAGTTTTAACAATCTTGCGAAGATTACACCTAAAGTATTGCAGGTTTGGGCGAGGATACTATGTGCAGTTCCAAATTCTCGTCTCGTGGTAAAATGTAAACCATTTTGCTGTGATAGTGTGAAACAGAGATTCCTTTCAACACTAGAGCAGTTAGGCATGGAACCGCTACGAGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCATATTCTCTGATGGACATCAGTTTGGACACATTTCCATATGCCGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCGTGTGTCACTATGGCTGGTTCTGTACATGCGCATAATGTCGGTGTTAGTCTCCTTAGCAATGTTGGACTTGAGCGTTTGGTTGCCAGAAATGAAGACGAATATGTTAAATTGGCTCTAGAGTTGGCGTCTGACATTTCAGCACTACAGAATTTGAGAATGAGTCTCCGAAATCTCATGTCCAAGTCCCCTGTCTGTGATGGTGCAAATTTCATCCTAGGTCTGGAGTCAACATACCGGAATATGTGGCGCAGGTATTGTAAAGGGGATGTTCCATCTTTGAAACGCATGGAGTTGTTGGAACAACCAGTTGCTGCTGACCCATCTATTAAGAATTCCGACACAACAAACTCAAGGGATGACAATCCTGAATCTGTCAAGACCAATGGATTTAATACAATGCAGTCATCTAAGCTTAATATATATACACATCCACACAACGCAATTCTGATGAACTTTGTTTCAATAGGCACGGACTTGGAGCTATTGCCAACCCAATCCTATTTGATCCCAACTTGGACTTGGGAAATGAAAGTTAGAGTTGTGTGCAGGAAAATTTATGATTACGTACGCTATGATCTCAAAGAAATTGCTTTTCCATCCTCTTTGCCTGATCCTCCTCATCTAAAAAAGCGCCGCATATTGACCTGGGAGGAGCGTATCTGGGTTTTGAAGAGAGCTGCTAGGTTTTATGCTGCAAGCTGGGTTCGTGACATTGGTCCTGATCTTCGTCCAGACGACTATAAGAAGGATGAAATGACTGAAGGAAGTAATACTGAAAAGAATACAACTAAAGAAAAAGAACCTTCAACACTGGAGGATCTGGCTGTAGCTGCCAGAGAGGGAATGGAGACTCTCAGACCTGCTTTGCAGCGTGTTTACATGACCAGAGCTTCTCCGTACAGGGATGCTCTTAAAAGTTTTGTAGCAGGGTACCAGGAGGGTGTTCAGAAAGTAATACAGAAGAAGGAAGATTTGAAAAGCCAAGAAGATGCCAATGTACCAAAAAAATCAACTTGA 3486 0.4197 MAGVVNNGSERELAGVNGFLQVSETSTSATGSAGDVVNEAGKTDSLSFANVLRSRNKFVDALALYERVLENDSGNVEALIGKGICLQMQSMGKLAFDSFSEAIRLDSQNACALTHCGILFKEEGRLLEAAESYQKALQVDPSYKVASELLAIVLTDIGTNIKLAGNTQEGIQKYFEAIKTDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAATERPMYAEAYCNMGVIFKNRGDLGSAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAFYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKIDAAAIMIEKAITANPTYAEAYNNLGVLYRDVGEITQAINAYEQCLKIDPDSRNASQNRLLARNYIDEGNDDKLFEAHRDWGRRFMRLYSQYTSWDNPKDPERPLVVGYISPDYFTHSVSYFIEAPLVYHDYTKYKVIVYSAVVKVMGPNPGNNLFACKDKDKATCIYPPQTPIDSFEMVVARVCQMTNCLETLRDGLAPMICCVNILTLADAKTIRFREKVLSRGGIWKDIYGADEKKVADMVREDQIDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPSIDYRITDSLADPPKTKQKHVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVKQRFLSTLEQLGMEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSNVGLERLVARNEDEYVKLALELASDISALQNLRMSLRNLMSKSPVCDGANFILGLESTYRNMWRRYCKGDVPSLKRMELLEQPVAADPSIKNSDTTNSRDDNPESVKTNGFNTMQSSKLNIYTHPHNAILMNFVSIGTDLELLPTQSYLIPTWTWEMKVRVVCRKIYDYVRYDLKEIAFPSSLPDPPHLKKRRILTWEERIWVLKRAARFYAASWVRDIGPDLRPDDYKKDEMTEGSNTEKNTTKEKEPSTLEDLAVAAREGMETLRPALQRVYMTRASPYRDALKSFVAGYQEGVQKVIQKKEDLKSQEDANVPKKST 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0177 1161 Pfam Glycosyl transferase family 41 586 697 IPR029489 -
Lal20g0177 1161 Pfam Glycosyl transferase family 41 714 892 IPR029489 -
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 396 429 IPR019734 GO:0005515
Lal20g0177 1161 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 37 920 - -
Lal20g0177 1161 MobiDBLite consensus disorder prediction 928 953 - -
Lal20g0177 1161 ProSiteProfiles TPR repeat region circular profile. 328 360 - -
Lal20g0177 1161 SUPERFAMILY TPR-like 259 432 IPR011990 GO:0005515
Lal20g0177 1161 SMART sel1 294 325 IPR006597 -
Lal20g0177 1161 SMART sel1 185 216 IPR006597 -
Lal20g0177 1161 SMART sel1 328 359 IPR006597 -
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 151 184 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 185 218 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 219 252 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 294 327 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 260 293 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 396 429 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 110 143 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 42 75 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 362 395 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 76 109 IPR019734 GO:0005515
Lal20g0177 1161 SMART tpr_5 328 361 IPR019734 GO:0005515
Lal20g0177 1161 Pfam Tetratricopeptide repeat 48 109 - -
Lal20g0177 1161 Gene3D Tetratricopeptide repeat domain 43 156 IPR011990 GO:0005515
Lal20g0177 1161 Pfam Tetratricopeptide repeat 186 249 - -
Lal20g0177 1161 SUPERFAMILY TPR-like 365 860 IPR011990 GO:0005515
Lal20g0177 1161 Pfam Tetratricopeptide repeat 328 361 IPR001440 GO:0005515
Lal20g0177 1161 Pfam Tetratricopeptide repeat 396 428 IPR001440 GO:0005515
Lal20g0177 1161 MobiDBLite consensus disorder prediction 1068 1093 - -
Lal20g0177 1161 Gene3D Tetratricopeptide repeat domain 262 458 IPR011990 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 328 361 IPR019734 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat region circular profile. 396 428 - -
Lal20g0177 1161 Gene3D Tetratricopeptide repeat domain 157 261 IPR011990 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Lal20g0177 1161 SUPERFAMILY TPR-like 47 268 IPR011990 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Lal20g0177 1161 ProSiteProfiles TPR repeat region circular profile. 185 216 - -
Lal20g0177 1161 Gene3D Glycogen Phosphorylase B; 712 887 - -
Lal20g0177 1161 Gene3D - 467 707 - -
Lal20g0177 1161 Pfam Tetratricopeptide repeat 364 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0177 Lal-Chr20 1222737 1238695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0177 588 955 Glycosyltransferase AT3G11540 80.163 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0177 K09667 - gmx:100807843 1570.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0177 20 1222737 1238695 Lal20g0177 20 1222737 1238695 ECH