Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0127 ATGAAGCTCCTTGATAAGGAGGATCTTGTTGTGAACCAAACCGGAACGGCAAAAATAATTCCAGAAGAATCCGATGACTTATGGGTCCTTTACAACCTTATATCTCAAAACGATGTCGTTTCGGCCGAAACAACCCGAAAGGTTCACCTTGAATCCTCCAACAAGAGCACCACTGCATCACGTGTCAAACTCACCCTCCACCTTAAAGTCACGTGGCATGACTTCCATAAAGACTCTTCAACCCTAAGAGTTCAAGGACGTAGCCTTGATGCTAACCCTTATGTCCCTCAAGGGTCGTTCCACACGTTTATCCTTGAGTTGAATAAACCCTTTGAGATAAGGAAGAAGGTTTGGGATTGTGATGCTGTTGAAGCATTGCGTGAGAGTGCTGAGAAAGTTTCTTGTTCTGAAGGTGACCTTGTTGTTGTTGTCATGCAACAAAGACATGCAGAGATATACTTGCTTGGGAAAGGGGTTACCACGTTGTGTTCAAAGATTGAAGGTTCTTCTTTGAAGAGTGGAAGAAAAGCTGTTGCTGCTTCTTCTTTGAAAGGGCCAGGGAATGCATTTTTCCGTGAAGTCTTTGGCTCTATCATAAAGCACGTGGATTTCAAAGTTGTTAAAAGTGTGGTCATTGCAAGTGATGGATCTACAAAAGACGAGTTTCGTAGGTTCCTTCTCTTAGAAGCAAAAAGGTTAAGAATGAAATCCATTGAAGAGAACAAGTCAAGAATAGTGGTAGTGGGATTAGAGTGCAACAACAAGGGTAATGATAATTTGAAAGAGGTTTTGGGTGACAGCACAGTGATGAATTCAATAAAGAACAGCAAGGTTGAGATAGAAATAAGGACTATGAGGGAATTATGGGAAATGGTGTGTAACAATTCTGATCGTGTATGTTATGGTCCTAAGAGTGTAGAATGTGCACAAGAGATGAAAGCCATTGAGACCCTTTTGATCACTGATGATCTTTATAGGAATGATGAGATTGGGACAAGGAAAAAGTATGCAAGTTTGGTGAAATCAGTGAAAGAGAATGGAGGGAAGGTTTTGGTATATCCCTCCATGCATGTGTTGGCTCAGCAGCTTCAACACCTCACAGGTGTTGCAGCTATTCTTAGGTTTCCCTTGCCTGATCTTGAAGAAATGGATGTTTAA 1158 0.4154 MKLLDKEDLVVNQTGTAKIIPEESDDLWVLYNLISQNDVVSAETTRKVHLESSNKSTTASRVKLTLHLKVTWHDFHKDSSTLRVQGRSLDANPYVPQGSFHTFILELNKPFEIRKKVWDCDAVEALRESAEKVSCSEGDLVVVVMQQRHAEIYLLGKGVTTLCSKIEGSSLKSGRKAVAASSLKGPGNAFFREVFGSIIKHVDFKVVKSVVIASDGSTKDEFRRFLLLEAKRLRMKSIEENKSRIVVVGLECNNKGNDNLKEVLGDSTVMNSIKNSKVEIEIRTMRELWEMVCNNSDRVCYGPKSVECAQEMKAIETLLITDDLYRNDEIGTRKKYASLVKSVKENGGKVLVYPSMHVLAQQLQHLTGVAAILRFPLPDLEEMDV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0127 385 Gene3D Pelota, domain A 1 132 IPR038069 -
Lal20g0127 385 SUPERFAMILY L30e-like 271 377 IPR029064 -
Lal20g0127 385 Pfam eRF1 domain 2 141 274 IPR005141 -
Lal20g0127 385 Pfam eRF1 domain 1 1 129 IPR005140 -
Lal20g0127 385 Gene3D eRF1 domain 2 138 273 IPR042226 -
Lal20g0127 385 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 384 - -
Lal20g0127 385 TIGRFAM pelota: mRNA surveillance protein pelota 7 377 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lal20g0127 385 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 129 IPR038069 -
Lal20g0127 385 SMART eRF1_1_2 1 131 IPR005140 -
Lal20g0127 385 PANTHER PELOTA 1 384 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lal20g0127 385 Pfam eRF1 domain 3 281 377 IPR005142 -
Lal20g0127 385 SUPERFAMILY Translational machinery components 138 277 - -
Lal20g0127 385 Gene3D - 276 385 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0127 Lal-Chr20 826805 828777 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0127 K06965 - gmx:100803618 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0127 20 826805 828777 Lal20g0127 20 826805 828777 ECH