Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0042 ATGGAGAACTTATTTGGCCTAGTTGATCATGAAGACTTCTTCTCAAGGCGTTGCATTTGGGTGAATGGCCCTGTGATTGTAGGGGCAGGCCCTTCAGGTTTAGCCACAGCAGCATGCCTTAGAGAAGAAGGGGTGCCCTTTGTTGTTCTAGAAAGAGCAGATTGCATAGCCTCATTATGGCAAAGAAGAACCTATGATAGGTTGAAACTTCACCTTCCAAAGCAATTCTGCCAACTCCCTAAACATCCATTCCCTGAAGACTTCCCTGAATACCCTTCAAAGAAACAGTTCATTGATTACCTTGAAACCTATGCAGAGAAATTTGAGATCAACCCACAATTCAATGAGTGTGTTCAATCTGCTAGGTATGATGAAACTTGTGGGTTTTGGAGGGTTAAGACTGTTTCTTCCACAAGTAGAAATGAGGTTGAGTATATTTGTAGGTGGCTTGTGGTGGCAACAGGTGAAAATGCTGAGTGTGTTAGGCCTGATATTGAAGGGCTAAGTGAGTTCAAAGGTGATCTTGTTTATGCTTCTGATTATAAATCAGGTCAACCATTCAAGGGGAAGAAAGTGCTTGTTGTTGGTTGTGGTAATTCTGGCATGGAGCTCTCACTTGACCTTTGCAACCACCATGCATCACCTTCCATGGTTGTTCGAAGCTCGGTTCATGTATTACCAAGAGAGATTTTCGGGCTATCAACGTTTGAATTGGCAGTTTTGATGTTGAAATGGCTACCCCTTTGGCTAGTTGACAAGCTTCTATTGATATTGACATGGTTTATTCTAGGCAACATAGAGAAATATGGGATAAAGAGGCCTTCAAAGGGACCTTTGGAGTTGAAGAACACAAAGGGGAAGACACCAGTTTTGGACATTGGTACCTTGGAGAAAATTAGATCTGGTGATATCAACGTTGTACCAGGAATCAAGAGGTTCAATAATAGAGATGTTGAGCTTGTTAATGGTGAAAAGCTTCATGTTGATGCAGTTGTTCTTGCAACTGGTTACCGCAGTAATGTCCCTTCTTGGCTTCAGGAAAGTGAATTTTTCTCTAAGAATGGATACCCAAAGATGCCATTCCCTCATGGTTGGAAAGGAAACTCAGGACTTTATGCTGTTGGGTTCACAAAGAGAGGGCTCTCTGGTGCTTCATCTGATGCTGTGAATATTGCTCAAGATATTAGAAATGTGTGGAAACAAGAGACTAAGCAAAAGAAGCAGAGAACTACTGCTTGTCATAGACGTTGCATTTCACAGTTCTAA 1266 0.4194 MENLFGLVDHEDFFSRRCIWVNGPVIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQRRTYDRLKLHLPKQFCQLPKHPFPEDFPEYPSKKQFIDYLETYAEKFEINPQFNECVQSARYDETCGFWRVKTVSSTSRNEVEYICRWLVVATGENAECVRPDIEGLSEFKGDLVYASDYKSGQPFKGKKVLVVGCGNSGMELSLDLCNHHASPSMVVRSSVHVLPREIFGLSTFELAVLMLKWLPLWLVDKLLLILTWFILGNIEKYGIKRPSKGPLELKNTKGKTPVLDIGTLEKIRSGDINVVPGIKRFNNRDVELVNGEKLHVDAVVLATGYRSNVPSWLQESEFFSKNGYPKMPFPHGWKGNSGLYAVGFTKRGLSGASSDAVNIAQDIRNVWKQETKQKKQRTTACHRRCISQF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0042 421 Gene3D - 24 405 IPR036188 -
Lal20g0042 421 Pfam Flavin-binding monooxygenase-like 26 348 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lal20g0042 421 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Lal20g0042 421 PRINTS FAD-dependent pyridine nucleotide reductase signature 191 209 - -
Lal20g0042 421 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 10 419 - -
Lal20g0042 421 SUPERFAMILY FAD/NAD(P)-binding domain 188 399 IPR036188 -
Lal20g0042 421 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Lal20g0042 421 PRINTS Pyridine nucleotide disulphide reductase class-II signature 187 211 - -
Lal20g0042 421 SUPERFAMILY FAD/NAD(P)-binding domain 25 300 IPR036188 -
Lal20g0042 421 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 10 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0042 Lal-Chr20 304744 306900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0042 K11816 - gmx:100819987 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0042 20 304744 306900 Lal20g0042 20 304744 306900 ECH
Lal11g1105 11 14762787 14765605 Lal20g0042 20 304744 306900 LSH
Lal20g0042 20 304744 306900 Lal2g1115 2 7984307 7986845 PCT
Lal20g0042 20 304744 306900 Lal9g1053 9 8482401 8485100 PCT
Lal12g0874 12 7195819 7197410 Lal20g0042 20 304744 306900 PCT
Lal13g1070 13 8002907 8005090 Lal20g0042 20 304744 306900 PCT
Lal13g0681 13 4402113 4418349 Lal20g0042 20 304744 306900 PCT