Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0039 ATGACGGCAATCCCATGGCCTCGTGATCAAGCATCTTCGAATCCCTATAATTCTAACAGCAGTGGTAGCAATGTTTTTAGTTTGCTAGTACGAAGAGAGATTTCTCCCAGAACAAAACACGTGACAAAACGGCAATGGGGAGAAGCTTCTAAATCGAAATCTGCTTCATACTCTCGTCCCAAAAAAGTAGTGAGAGATGCTAGGCATGGCCTCCTATCATGGGTTGAGGCCGAGTCATTGCGACATTTGTCAGCTAAGTATTGCCCTTTGTTGCCTCCCCCACGGTCTACTATCGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCTTCCACACATGGTGACCACACAGTAAAGATAATTGACTGTGAAACTGGAAGTTGCTTAAAGGTGTTGGTTGGACATAGGAGGACACCTTGGGTGGTTAGGTTCCATCCGTTGCATCCAAAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGTCCCATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATTCTTGCGGTTGCATCAGGCCACAAGCTGTACATATGGCACTACAACAAGAAAGGTGAAGCATCCTCACCGGTATTTGTGTTGAAGACGAGGCGCTCACTACGGGCTGTGCATTTTCACCCGCATGCTGCACCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGTCAGAAGCAACATCTATTGGTTATTTACAATACCCTCCACCTACTGTTTTTGTCACAAATATTCATCCTAGGGAACATAGTAGTTTGTCCAGTGAACTACCCTATTCGTCATTGCCTTTCTTCATCGTGCCTTCATATGCTGTTAATGAGTCAAGAGAACCTCAGCATACTAGTCATGATGCAGCGGGTTCAGGTAGTGTGCAAATTGAATCTTCTGACACACTGCAGTTTCAAGTGGACACAAACACAACAGAGCAATATGATACGACAGTGTCTCCGATGGATACAGTCTCCGAAGTGCCTGTTAGCCCTCAAACCGGTACAGAGTATCCTGCTCATACTACTTTCTCCAACGGAATGCGAATTGGTGTCAATAACCCGACAATGGATGGTATGGAGATGGATGAAACCGAACCAGCTGAAGGAACTCAACATGGAAACTCTAATAATGCTTATTCTCTTAATGGCATGCTAAATCGAATGTCTAGGCAAACTGTGAATCATGATCTTCCCTTGGAGATTGGTCAATTTAATCAGTTTTACCCTTCAGGAGATCCAAGTGGATGGGAGTTACCTTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTCCCTCGTGTGGGTGTTAATCGTGACAGTCTAACTCAACAGGTTGGTTCATCCAATCCTAATGTTGATGTAGCAATGCCTGTCAGCATCTGCATACCTGGATCTTCTCTGAGATCAGGTTTATGGAATCATTATTCACAATCCCGTATACCTGTATCCGAGTCTGGCAATGTTGCTGCTTCTATTAATACCCCGCATGATGGGTCTGATATCCAAACCTACATCAGCCGAATCCAGTCAGAGCTTGCCACATCAGTGGCTGCAGCCGCGGCCGCAGAGTTGCCTTGCACTGTGAAGTTAAGAGTATGGTCGCATGACATAAAAAATCCCTGTGCCTCACTACATGCTGACAGATGTCGTCTCACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCGTGCGGTAAATTTTTAGCTGTCTGTGTTGCATGTATGCTTCCTCACATTGAAGGTGATCCAGGATCACAAACTCCAGTACACCAAGAGCCTGCCATTGCAACATCACCAACTCGGCATCCAATCTCGGCGCACCAAGTCATGTACGAGTTGCGGATATATTCCCTTGAGGAGGCAACATTTGGTTCAGTGCTTGCTTCACGGGCAATTAGAGCAGCTCATTGTTTGACTTCAATTCAGTTCTCACCTACATCCGAACACATATTACTTGCCTATGGTCGGCGTCATGGGTCTTTACTTAAAAGCATCGTCATTGATGGAGAAACAACGTTACCTATATACACAGTGTTAGAGGTATACAGAGTGTCGGATATGGAGCTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCACCCTTTTGCTGGTGGAGGGCTAGTTTATGGAACAAAGGAAGGAAGGCTTAGAGTCCTCCAGTATGATGGTGCGCAACCTGTGAGCGGAACCGGACCAAGTTACTTTCCTGAAGAGAACATCATAGGAATCAGTCAGTGA 2367 0.4525 MTAIPWPRDQASSNPYNSNSSGSNVFSLLVRREISPRTKHVTKRQWGEASKSKSASYSRPKKVVRDARHGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPKILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEILAVASGHKLYIWHYNKKGEASSPVFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMSEATSIGYLQYPPPTVFVTNIHPREHSSLSSELPYSSLPFFIVPSYAVNESREPQHTSHDAAGSGSVQIESSDTLQFQVDTNTTEQYDTTVSPMDTVSEVPVSPQTGTEYPAHTTFSNGMRIGVNNPTMDGMEMDETEPAEGTQHGNSNNAYSLNGMLNRMSRQTVNHDLPLEIGQFNQFYPSGDPSGWELPFLQGWLMGQSQVGVPSMLPRVGVNRDSLTQQVGSSNPNVDVAMPVSICIPGSSLRSGLWNHYSQSRIPVSESGNVAASINTPHDGSDIQTYISRIQSELATSVAAAAAAELPCTVKLRVWSHDIKNPCASLHADRCRLTIPHAVLCSEMGAHFSPCGKFLAVCVACMLPHIEGDPGSQTPVHQEPAIATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGRLRVLQYDGAQPVSGTGPSYFPEENIIGISQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0039 788 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 787 - -
Lal20g0039 788 Pfam WD domain, G-beta repeat 99 122 IPR001680 GO:0005515
Lal20g0039 788 Pfam WD domain, G-beta repeat 126 165 IPR001680 GO:0005515
Lal20g0039 788 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 96 767 IPR011047 -
Lal20g0039 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Lal20g0039 788 SMART WD40_4 84 122 IPR001680 GO:0005515
Lal20g0039 788 SMART WD40_4 168 205 IPR001680 GO:0005515
Lal20g0039 788 SMART WD40_4 125 165 IPR001680 GO:0005515
Lal20g0039 788 SMART WD40_4 723 763 IPR001680 GO:0005515
Lal20g0039 788 Gene3D - 79 254 IPR015943 GO:0005515
Lal20g0039 788 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 787 - -
Lal20g0039 788 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Lal20g0039 788 MobiDBLite consensus disorder prediction 39 60 - -
Lal20g0039 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 170 - -
Lal20g0039 788 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0039 Lal-Chr20 261765 268782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0039 99 266 Miscellaneous Gene Families AT5G08390 24.862 3.78e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0039 - K17985 gmx:100817857 1298.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0039 20 261765 268782 Lal20g0039 20 261765 268782 ECH