Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0027 ATGGACAAGTTGAAGTTAGCACAACTAGGTGAGAGGCTGAAAACGGGTGGAGCACAAATGGGTCGGATTGTGAGTGGAAAAATGAAAGAAATCTTGCAAACTCCCACACCAGAATCAAAGATGGTTGATGATGCTACGTTGGAGACATTGAATGAGCCAAATTGGAGCATGAACCTCAGGATATGTGGCATGATCAATAGTGAAGAGTTCAATGGTTCTGAGATTGTTAAAGCAATCAAGAGGAGGATTAATCATAAGAGCCCTGTTACCCAAAGGCTTACCTTTGACCTTTTGGAAACTATTGCTATGAATTGTGAGAAGGTGTTCTCTGAAGTGGCATCTGAGAAGGTGCTTGATGATATGGTGAGGTTGGTACAGAATCCAGAAGGGGATGGGAATAATAGAAAGAGGGCTTTTCAGTTGATCAGGGCTTGGGGTGAGTCTCAGGATCTTGCTTATCTTCCTGTCTTTCGTCAAACTTACATGAGTTTGAAAGAAAGAGAAGAACCACTAGACTTCGGAGGAGACAACTCACCAACTGCTCCATATACCTTGGAGTCATATTTGGATCAACAGCGTTTAAATCCACCTGGAATATACCCTACTCCTCCATCAGGATCACTACATGCTTTGAATGATTCATCTTTCTCTTCTGACCAACACATATCAATTGAAGAGAAGAAAGAGCATCTTGTGATTGCACGAAACAGTCTTGAATTGCTCTCTAGCATATTAAATACCGAGGAAGAGCCAAAACCTTTAAAGGAAGAACTAACTCTGAACTTGTTGGATAAGTGCAAGCAGTCACTCTCTATCATCAAGGGGATTGTGGAAAGTACCACAAATGATGAAGTGACACTTTTTGAGGCTTTGTATCTTAACGATGAGCTGCAACAGTTAGTTTCAAAATATGAAGAGTTGGAAGCTGCTAAAGAATCTGGCGAACAACAACCTCAAAATGCTGACACTGCCAAGGACGATGCTGAAACTATTCAAAATCCTAACAAACAACCTGAAAAATCTGAATCTGAAGAGTCTGAGAATCTTGAAAGGGAGCTACCTGAAAAGTTTAACACTCTTGAAGTCAATTTAAACGTTGAGGATCATCATGTTGAAACCAAAATAGAGGATAGCAGGAAAGAGAATGGTGCTGGATCTAGCAGCAAGATAAATAACGAGTAG 1182 0.4069 MDKLKLAQLGERLKTGGAQMGRIVSGKMKEILQTPTPESKMVDDATLETLNEPNWSMNLRICGMINSEEFNGSEIVKAIKRRINHKSPVTQRLTFDLLETIAMNCEKVFSEVASEKVLDDMVRLVQNPEGDGNNRKRAFQLIRAWGESQDLAYLPVFRQTYMSLKEREEPLDFGGDNSPTAPYTLESYLDQQRLNPPGIYPTPPSGSLHALNDSSFSSDQHISIEEKKEHLVIARNSLELLSSILNTEEEPKPLKEELTLNLLDKCKQSLSIIKGIVESTTNDEVTLFEALYLNDELQQLVSKYEELEAAKESGEQQPQNADTAKDDAETIQNPNKQPEKSESEESENLERELPEKFNTLEVNLNVEDHHVETKIEDSRKENGAGSSSKINNE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0027 393 Coils Coil 290 317 - -
Lal20g0027 393 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Lal20g0027 393 PANTHER TOM1-LIKE PROTEIN 2 1 356 - -
Lal20g0027 393 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Lal20g0027 393 Gene3D - 29 179 IPR008942 -
Lal20g0027 393 PANTHER TOM1-LIKE PROTEIN 1 1 356 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal20g0027 393 CDD VHS 39 165 - -
Lal20g0027 393 SUPERFAMILY ENTH/VHS domain 34 167 IPR008942 -
Lal20g0027 393 MobiDBLite consensus disorder prediction 338 383 - -
Lal20g0027 393 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Lal20g0027 393 SUPERFAMILY GAT-like domain 217 308 - -
Lal20g0027 393 Gene3D - 220 316 IPR038425 -
Lal20g0027 393 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Lal20g0027 393 MobiDBLite consensus disorder prediction 313 337 - -
Lal20g0027 393 MobiDBLite consensus disorder prediction 308 393 - -
Lal20g0027 393 Pfam GAT domain 235 308 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0027 Lal-Chr20 196246 200471 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0027 - - gmx:100803803 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0027 20 196246 200471 Lal20g0027 20 196246 200471 ECH