Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0007 ATGTCTGAACTGATTGAAGGACTTCCTGATGCTGTTTCAATTAGGTGTCTTGCACGGGTTCCCTTCTACCTTCACCCGACACTCGAACTTGTCTCTCATTCTTGGCAAGCAGCCGTTCACAGTCCAGAGTTATTCAATGCTCGCCACGAGATTGGTTCATCCGAGGATCTCTTATGTGTCTGTGCTTATGACCCAGAGAATTTGTGGCAGCTCTATGACCCTCTTCGTGATCTTTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGACACCTTGCCCACTTTGGTGCCGTCTCCACTGCTGGAAAGTTGTTTGTCATTGGTGGTGGAAGTGGAGGAGTTGATCCCTTGACCGGTGATCAGGATGGTTGTTTTGCAACAAATGAGGTCTGGTCATACGACCCTGTACTTCGACACTGGGCCCCTCGGGCTTCAATGCTTGTTCCCCGCTCCATGTTTGCATGCTGTGTTTTGAATGGCAAAATTGTTGTCGCTGGTGGCTTTACTAGCTGCAGAAAATCAATCTCTCATGCAGAAATGTATGATCCTGACAAGGATGTTTGGATTCCAATGCCCGATCTTCATCGCACTCATAATTCAGCTTGTTCAGGAGTAGTGATTGAGGGAAAGGTCCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCAAGGGTGGACTGTCGAGGAATTCGAGTGGCTCCAAGGTCCGATGGCAGTTGTCCAGGGTGCACTTTATGTGATGAGCCATGGATTAATCAAGCAGGACAAGGAAGTGAGGAAGGTAGTTGGTTCTGCATCCGAGTTTCGAAGGAGATTTGGGTTTGCAATGATTGGACTAGGTGATGAGCTATATGTGATTGGTGGATTAATTGGCCCTGACAGAATGAGTGACATTCAACCATTATCTAATGTTGATGTTCTCACACTTGGGAGTGAGAGACCAACTTGGCGCCGCTCTGCTTCAATGACACGGTGCCGTGGTACTATTCTTGGTTGCACAGTGCTGAGAATTTAG 1032 0.4729 MSELIEGLPDAVSIRCLARVPFYLHPTLELVSHSWQAAVHSPELFNARHEIGSSEDLLCVCAYDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGAVSTAGKLFVIGGGSGGVDPLTGDQDGCFATNEVWSYDPVLRHWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISHAEMYDPDKDVWIPMPDLHRTHNSACSGVVIEGKVHVLHKDMSTVQVLDNAGQGWTVEEFEWLQGPMAVVQGALYVMSHGLIKQDKEVRKVVGSASEFRRRFGFAMIGLGDELYVIGGLIGPDRMSDIQPLSNVDVLTLGSERPTWRRSASMTRCRGTILGCTVLRI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0007 343 Gene3D - 61 342 IPR015915 GO:0005515
Lal20g0007 343 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 343 - -
Lal20g0007 343 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 343 - -
Lal20g0007 343 SMART kelc_smart 288 342 IPR006652 GO:0005515
Lal20g0007 343 SMART kelc_smart 161 209 IPR006652 GO:0005515
Lal20g0007 343 SMART kelc_smart 103 160 IPR006652 GO:0005515
Lal20g0007 343 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Lal20g0007 343 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Lal20g0007 343 Pfam Kelch motif 276 328 IPR006652 GO:0005515
Lal20g0007 343 SUPERFAMILY Kelch motif 61 332 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0007 Lal-Chr20 66717 67748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0007 8 188 Miscellaneous Gene Families AT4G33900 30.526 4.94e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0007 - - gmx:100788983 612.068