Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1871 ATGGCTTCAATGCAATATCTCAATGAAATCTTAGCTTCAACCCTTTCTTCTTTAGGATCCTCAGATACCCTTATGAGTGTGATCCTTGGATTGCCTTTATTGGAACTTATTTCAATCTTCACAAACTTGACTTTCCTTCTTCTTTTTCTCTTTGTTGTCTTTTTAAGGAAAGTGCATTTGAGTGTAAACACTGCTAGATATAGTAAGGACAATAGGGGCAATAATGGCAGCCAAATTAGTCATAGTTTTGATCCTGAAATACACAACTTTCGAATTAGTACATGGTTCAAGTTGTCTGTGTTGTCTTGTTTCTATGTTCTCTTGGTGCAAGTTTTGTTGTTGGGGTTTGATGGTGTTACTTTGATTAAGGGGAAGAGGAAAACTGTGGATTTGTGTCTTATTTCTGTGCCAGGTGTTCAGTGTTTAGCTTGGTTGGTATTAAGCTTCTCAGCTTTGCGTTGTAAATTCAATGTGTCTGAGAAGTTTCCAATTTTGTTGAGAGTTTGGTGGATTGTGTCGTTTGTTATTTGCTTGTGTATTTTGTATGTTGATGGGAGAGGGTTTTGGGTAGAAGGTTCTAAGCATGTAGGTTCACACGTTGTGGCGAATTTCGCTGTCACTCCTGCTGTAGCTTTCTTGTGTATTGTTGCAATTCGGGGTGTTACTGGTATAGAAGTTTGTACGAATTCCGAGATTCAAGAACCATTGCTTGTTGAAGAAGAACCGGGTTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTCAGCTTGGCCACTTTGTCTTGGCTGAACCCTCTTCTTTCCATTGGTGCAAAGAGACCACTTGATCTTAAGGACATTCCCCTCGTTGCACAAAAAGATAGAGCTAAGACCAATTATAAGATTTTGAATTCGAATTGGGAGAGATTGAAGGCCGAAAATCCATTGAAGCCGCCTTCATTGGCGTGGGCACTTCTGAAATCATTTTGGAAAGAGGCAGCATTTAATGCAATCTTTGCCGGCTTGAATACTCTTGTTTCATATGTAGGTCCATACATGATAAGTTACTTCGTTGATTACTTGGGTGGTAAAGAGATTTTCCCTAATGAAGGGTATGTCCTTGCGGGAATTTTCTTTGTGGCGAAGCTTTTGGAGACTTTCACAACTCGGCAGTGGTATCTAGGAGTGGATATCTTAGGCATGCATGTTAGATCAGCTCTAACGGCAATGGTGTACCGAAAGGGGCTAAGACTCTCGAGCCTGGCAAGGCAAAGTCACACGAGTGGTGAGATTGTTAACTACATGGCTGTAGATGTTCAAAGGGTAGGGGACTATTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTACAGATTGTTCTCGCCCTTGCAATTTTGTATAAGAATGTCGGTATTGCTTCTATTGCAACACTCATTGCCACAATCATTTCCATTGTTGTCACTATTCCTATAGCGAGGGTCCAAGAGGATTACCAAGACAAATTAATGGCTGCCAAGGATGAAAGGATGAGAAAAACATCTGAATGCTTGAGGAATATGAGGATTCTCAAGCTTCAAGCTTGGGAAGAAAGATATCGAATTAAATTGGAGGAAATGCGCGGAGTGGAGTTCAAGTGGCTAAGGAAAGCCCTCTATTCTCAGGCGTTCATAACTTTCATATTCTGGAGTTCTCCTATATTTGTTTCAGCTGTCACTTTTGCTACTTCCATATTGCTCGGTGGCCAGTTAACTGCAGGTGGTGTTCTTTCTGCTCTAGCTACTTTCAGAATCCTACAAGAACCTTTGAGGAATTTTCCAGATTTGGTTTCAACTATGGCTCAGACAAAAGTTTCTCTTGATCGAATATCCTGTTTCCTGCTGGAGGAAGAGTTGCCGGAAGATGCAACTCTTAACTTGCCGCAAGGTATTTCTAATATTGCTGTAGAAATTAAGGATGGTATCTTCTGCTGGGACCCTTCTTCTTCTAGGCCTACTCTGTCAGGGATACACATCAAAGTTGAAAGAGGAATGCGTGTGGCGATTTGTGGTATGGTTGGTTCTGGGAAATCGAGTTTTCTTTCGTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCTTCTGCATATGTCTCCCAATCAGCATGGATACAGTCCGGAAATATAGAAGAAAATATCCTCTTTGGAAGTCCATTGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCATTGAAAAAGGACCTCGAACTTTTCTCACACGGTGATCAAACAATTATCGGTGATAGAGGTATTAACCTGAGTGGTGGCCAGAAGCAGCGAGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTCGATGACCCCTTTAGTGCTGTTGATGCCCACACTGGATCAGAATTGTTTCGGGAGTATATATTGGCAGCACTAGCAGATAAAACGGTCATTTTTGTGACGCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTTAAAGAAGGCTGCATTATACAAGCAGGAAAGTATGACGATCTCTTGAAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTGCTCACTCCTCTGAAGATTCGGATGAAAATTTATGCTTGGATACATGTGATGAGTCCAGAAAGAAATCAATTTGTTCATCAAATGATATTGAATGTTTGGCAAAGGAAGTGCAAGAGGGGTCATCGGCTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAGAGCGAAGCGGTCGAGAAAAAAGCAGCTTGTGCAAGAAGAGGAAAGAGTTAGAGGTAGAGTGAGCATGAAGGTGTACTGGTCATACATGGCAGCAGCATATAAAGGGTTATTGATTCCACTCATAATCATAGCACAAACATTATTTCAATTTCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAACCCTCAAACCGAAGGAGACCAGCCCAAAGTAACTCCTACAACTCTTCTACTTGTTTACATGGCCCTTGCATTTGGAAGCTCATTGTTTATACTTGTAAGAGCTGTTCTGGTTGCTACATTTGGCCTTGCAGCTGCTCAGAAGCTATTTCTGAAGATGCTTACTAGTGTTTTCCATGCACCGATGTCTTTCTTTGACTCCACGCCAGCTGGAAGGATCTTGAATAGGGTATCAGTTGATCAAAGTGTTGTGGATCTTGACATTCCCTTTAGACTCGGTGGCTTTGCTTCGACAACAATACAGGTAATTGGTATTGTAGGTGTCATGACTGAAGTTACATGGCAAGTTTGGCTCCTCGTTATCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTGCGAATCGTAAGCATCCAGAAGTCACCAATTATAAATCTTTTTGGCGAATCAATCGCCGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCGTGAAGAGGAACCTATATCTTCTCGATTGTTTTGCAAGACCATTTTTCTGCAGTCTTGCAGCCATTGAGTGGTTGTGCCTGCGGATGGAGTTACTATCAACCTTTGTATTTGCCTTCTGCATGGTATTGCTTGTAAGCTTTCCCCAAGGAAGTATTGACCCTAGCATGGCCGGACTTGCTGTCACATATGGCCTGAACTTAAATGCTCGCCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAGAATAAGATTATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCGGCGGTTATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATCCAAATAATTGATTTAAAGGTACGATACAAGGAGAATCTTCCAATGGTGCTTCATGGAGTATCATGCACATTTCCCGGAGGGAAGAAGATCGGAATAGTTGGACGTACGGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGGTTGATTGAACCCTCAAGTGGAAGTATCCTTATAGACAACATTAATATTTCCGATATTGGTCTTCATGACCTTAGAATCCATCTTAGTATCATACCCCAAGATCCAACTTTATTTGAAGGAACCATTAGAGGCAATCTTGATCCTCTCGAAGATCACTCGGATAAAGACATTTGGGAGGCACTAGATAAGTCTCAGCTTGGCGAGATTATCCGTGAGAAAGGGCAACAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTTGGACAGCGACAACTTGTTTCTCTAGGCCGAGCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAGGCAACAGCATCAGTTGATACTGCCACTGATAATCTGATCCAGAAGATTATTCGAAATGAGTTTAGAGACTGCACAGTGTGCACCATTGCTCATCGCATTCCTACTGTTATCGATAGTGATCTAGTTCTGGTTCTCAGTGATGGTAGAGTTGCAGAGTTTGACACTCCTTCAAGACTATTAGAGGATAAGTCATCCATGTTTTTGAAGTTGGTGACTGAGTATTCATCGCGATCAAGTGGTATACCAGAATTCTAA 4602 0.417 MASMQYLNEILASTLSSLGSSDTLMSVILGLPLLELISIFTNLTFLLLFLFVVFLRKVHLSVNTARYSKDNRGNNGSQISHSFDPEIHNFRISTWFKLSVLSCFYVLLVQVLLLGFDGVTLIKGKRKTVDLCLISVPGVQCLAWLVLSFSALRCKFNVSEKFPILLRVWWIVSFVICLCILYVDGRGFWVEGSKHVGSHVVANFAVTPAVAFLCIVAIRGVTGIEVCTNSEIQEPLLVEEEPGCLKVTPYSDAGLFSLATLSWLNPLLSIGAKRPLDLKDIPLVAQKDRAKTNYKILNSNWERLKAENPLKPPSLAWALLKSFWKEAAFNAIFAGLNTLVSYVGPYMISYFVDYLGGKEIFPNEGYVLAGIFFVAKLLETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLARQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTIPIARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEERYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISCFLLEEELPEDATLNLPQGISNIAVEIKDGIFCWDPSSSRPTLSGIHIKVERGMRVAICGMVGSGKSSFLSCILGEIPKLSGEVRVCGSSAYVSQSAWIQSGNIEENILFGSPLDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILAALADKTVIFVTHQVEFLPAADMILVLKEGCIIQAGKYDDLLKAGTDFKTLVSAHHEAIEAMDIPAHSSEDSDENLCLDTCDESRKKSICSSNDIECLAKEVQEGSSASDQKAIKEKKRAKRSRKKQLVQEEERVRGRVSMKVYWSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPTTLLLVYMALAFGSSLFILVRAVLVATFGLAAAQKLFLKMLTSVFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQVIGIVGVMTEVTWQVWLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFVKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPQGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSRPPSSWPENGTIQIIDLKVRYKENLPMVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPSSGSILIDNINISDIGLHDLRIHLSIIPQDPTLFEGTIRGNLDPLEDHSDKDIWEALDKSQLGEIIREKGQQLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRNEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPEF 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1871 1533 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Lal1g1871 1533 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1287 1521 IPR003439 GO:0005524
Lal1g1871 1533 CDD ABCC_MRP_domain2 1285 1505 - -
Lal1g1871 1533 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 970 1240 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal1g1871 1533 Coils Coil 287 307 - -
Lal1g1871 1533 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 80 1533 - -
Lal1g1871 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 864 IPR027417 -
Lal1g1871 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1278 1517 IPR027417 -
Lal1g1871 1533 SUPERFAMILY ABC transporter transmembrane region 956 1267 IPR036640 GO:0005524|GO:0016021
Lal1g1871 1533 Pfam ABC transporter 660 794 IPR003439 GO:0005524
Lal1g1871 1533 Pfam ABC transporter 1304 1452 IPR003439 GO:0005524
Lal1g1871 1533 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 80 1533 - -
Lal1g1871 1533 Gene3D ABC transporter type 1, transmembrane domain 929 1268 IPR036640 GO:0005524|GO:0016021
Lal1g1871 1533 Gene3D ABC transporter type 1, transmembrane domain 298 623 IPR036640 GO:0005524|GO:0016021
Lal1g1871 1533 SMART AAA_5 1313 1498 IPR003593 -
Lal1g1871 1533 SMART AAA_5 669 850 IPR003593 -
Lal1g1871 1533 CDD ABCC_MRP_domain1 642 841 - -
Lal1g1871 1533 CDD ABC_6TM_ABCC_D2 968 1262 IPR044726 GO:0140359
Lal1g1871 1533 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Lal1g1871 1533 Coils Coil 925 945 - -
Lal1g1871 1533 SUPERFAMILY ABC transporter transmembrane region 316 616 IPR036640 GO:0005524|GO:0016021
Lal1g1871 1533 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Lal1g1871 1533 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal1g1871 1533 Gene3D - 1270 1523 IPR027417 -
Lal1g1871 1533 Gene3D - 624 884 IPR027417 -
Lal1g1871 1533 Pfam ABC transporter transmembrane region 970 1212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal1g1871 1533 Pfam ABC transporter transmembrane region 331 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1871 Lal-Chr1 21010200 21018187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1871 642 858 Calmodulin-binding Proteins AT2G36910 31.356 1.33e-19 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1871 - - gmx:100790550 2590.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1871 1 21010200 21018187 Lal1g1871 1 21010200 21018187 ECH
Lal1g1871 1 21010200 21018187 Lal12g0867 12 7082835 7091746 PCT
Lal1g1871 1 21010200 21018187 Lal13g1059 13 7834868 7844241 PCT
Lal12g0867 12 7082835 7091746 Lal1g1871 1 21010200 21018187 PCT
Lal13g1059 13 7834868 7844241 Lal1g1871 1 21010200 21018187 PCT