Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1787 ATGGATCGACTTCGTAAGCATCAGGTATCATTGAGAGGAGCAAGTGCAAAGGAGATAACAAGAGATGACCTTCTTCAGAAGGTGTCTCGCGAAAGGGAGCTTCGCAATTATGCTAAACGCGCTGCTGCCGCTGCTCTCTTCATTCAGAGAGTATGGAGGCACTTCAAGGTTACAAAAATGGTTGCCTTGAAGCTCCAGCAGGAGTGGGAGATATCAGTGAGTCATTATTCTGGTGTGAGGACAGCAATTTGGATTTCAAACAATTTGTTGAGACCGTTTCTTTTCTTTATTACCCATCTCCCAAATCGGCGTCAGAAGGTCGATAGCAAGAAAATTGTCTCTATGAAGATGGGCTTTACAATCCTAATGGAAAGCTTGAAGTCGCCTGATTCCAAGCAGAACTTTTGCTGTTTGGCAATTGGTACAACTGAAGAGAGAAGAATATGGAGTTATCAGGCACGGAGGCTAACTTCTCTTGGCTTTCTCATTCTTTCAGAGTTAAGTGAATGCAATTCAGGGGACCAAGATTTTACTGTTGTTACATCTCTAGCAATGCGTGTTCTTGTTTTGTTAACTGATCTGAAAGGATGGAAAGGCATTACTGATGACCCCCATCTAGATGCAGAGTTAGCAGTGAAAGATTTAATCCAGTTTATGGGGAGTGATAAAAGTGGTAGTTATGTGTCTATTGCCAGATACGTTCATGCATTGAATAGTAATTCTTCTCTGACAAAAAATATCACCCAGGCGGATGAATCTTTTTTAATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCATTTTATCTGACAAATTTTGATGTAAATGGGCTTAGTATGCTGGATGTTAATCATGCTGCTCAGCGGTATATTGTACATTTATTGACTATTCCTTGGCTCGTGAAACGTCTTCCATCTGTTCTTCAACCTGCTCTAAAGCACAAATCCATATTGTCCCCGTGCTTCCAAAATCTATTGATTCATAAAGAGAATGTTTTAATGGAGATGTCAGAGTTGGTACAGTCAGAGGTTCCTGTCTCGTTCAAGGCAATTCCACCAGTTGGTTGGGCTCTCACTAACATTATATGCCTAGCAACAGGGAATGGGAATGGTTCTGTGGACTCTGGATCCTTCAATCATGGTTTAGACATTGGATTGTATGTCCGTGTTGTTATCGCTCTAGCAGAAAGCCTACTGTCTTGTCTTGATAATAATGTATGGACCGCAAAGAAGAAGAAAGTCCTTCAGCCTGATGTTGAAACTTCAAATCAGCCAGTTGATATGGTTCTACATGACGGTGAAGCAACCTATGAGTCTGTAATAGTGTCATACATTGATCAGTTTAGACCTGTTTGTCAGCAATGGCATCTTACAAATCTTCTAGCATCAATAAATACAGACACCACTAACAAGCCTGAGATTACACTCTCCAATAGTCTGGAACATTTGAGGAAACTAGATTTGTGTGACGTTACACTTTTATATTCTAATATACTTAGAATACTTTCATCCTTGAGTCCAACCCGTGGCTCATTACCAGTTCTCAACATGCTATCCTTCACTCCTGGATATCTTGTCAGATTGTGGGATGTACTGGAGGATGCCTATTTTTCTGGAGACAAACATATTTATGATAACGGCACAAGGGAAAAAAGAAAAGATAAAGATTTCGAGAAGATGCAAAAACAGGCAAGTAAGAACGGGGCTAATATGTGGGCCAGCGTACTTAATAAATTTACAGGAAAGTCACAAGCTGCAACTGATTGTACAAATTCCGTTGGTAGTTGCTCTCAGCCTAGCATAGTAGATGAGAATGATTCATCAGATATATGGGACATAGAACCTATGAGACTTGGACCACAAGGCATTCCAAAGGATAAATTTGCTATGGTTCATCTTTTCTGTGCGACCTATTCACATCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCAAATTAGAGCAGCAAAGAAGAATTGCATCATTGCTCAATACCCTAGTGTATAATGGATTGTCCAATGTTAACGGTCATCATAATAGGCCACTCACGGACTGTGCTATCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACTCATTCTGTCCCCCTGGTTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCAGCTGCTGCCAGAACTCATGAAGTTTTATCAAATAACCTGAGATCTGATGATTCATCATCAGCTGCCCTGAGTGTAGGTTCTGTCATCACAATGACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGCGAATTCATCAAGATGGACAAGAACTCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCGATTGAGGTAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAACTCCCTCGGGTCAAAGTTGAAGTCATCTATCCATGTATCATTTGTCAGTGAATGTGGCCTTCCGGAGGCTGGTCTGGACTATGGCGGACTATCTAAAGAGTTTTTGACTGACATATCAAAAGCTGCGTTCACCCCTGAATATGGACTTTTTTCCCAAACCTCAACTTCAGATAGGCTTCTAATCCCAACTATATCTGCAAGATATTTGGATAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTTGGTAAAGCCCTGTATGAAGGAATATTACTCGACTATTCCTTCTCACATGTTTTTGTACAAAAGCTATTGGGACGTTATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTGTACAGGAGTCTGATGTATGTCAAGAATTATGATGGTGATGTCGGGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCACGTGGTCGAGCTTAAGTCTGGCGGCAAAGATATCTCTGTAACAAATGAGAACAAAATGCAGTACATTCATGCAATGGCAGACTACAAACTCAACCAACAGATATTGCCTTTTTCTAATGCATTTTATAGAGGGTTAACCGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAGTTTAATCAGCTTCTTTCAGGTGGAAATTATGATATCGATATTGATGACTTGAAAAATAACACACGATATACCGGTGGTTACAATGAGGGAAGCCGGACAGTGAAGATTTTTTGGGAGGTGATTAAAGGCTTTGAACCAAAAGAGCGCTGTTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAGCTTTTACCATCCACAAGGTTGCATGTGATGTTCCTCTTTGGGCAACCATTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACTTGCTATAATACTCTTAAGCTTCCAACATACAAACGTCCAGGGACTTTGAGAACAAAGATTCTATATGCTATCAATTCAAATGCTGGATTTGAACTTTCTTGA 3495 0.4063 MDRLRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWRHFKVTKMVALKLQQEWEISVSHYSGVRTAIWISNNLLRPFLFFITHLPNRRQKVDSKKIVSMKMGFTILMESLKSPDSKQNFCCLAIGTTEERRIWSYQARRLTSLGFLILSELSECNSGDQDFTVVTSLAMRVLVLLTDLKGWKGITDDPHLDAELAVKDLIQFMGSDKSGSYVSIARYVHALNSNSSLTKNITQADESFLITASAITLAVRPFYLTNFDVNGLSMLDVNHAAQRYIVHLLTIPWLVKRLPSVLQPALKHKSILSPCFQNLLIHKENVLMEMSELVQSEVPVSFKAIPPVGWALTNIICLATGNGNGSVDSGSFNHGLDIGLYVRVVIALAESLLSCLDNNVWTAKKKKVLQPDVETSNQPVDMVLHDGEATYESVIVSYIDQFRPVCQQWHLTNLLASINTDTTNKPEITLSNSLEHLRKLDLCDVTLLYSNILRILSSLSPTRGSLPVLNMLSFTPGYLVRLWDVLEDAYFSGDKHIYDNGTREKRKDKDFEKMQKQASKNGANMWASVLNKFTGKSQAATDCTNSVGSCSQPSIVDENDSSDIWDIEPMRLGPQGIPKDKFAMVHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASLLNTLVYNGLSNVNGHHNRPLTDCAIRCLHLMYERDCRHSFCPPGLWLSPARKSRPPIAAAARTHEVLSNNLRSDDSSSAALSVGSVITMTPHVFPFEERVEMFREFIKMDKNSRKMAGEISEPGSRAIEVVVRRGHIVEDGFRQLNSLGSKLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFTPEYGLFSQTSTSDRLLIPTISARYLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDVGELCLDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTVKIFWEVIKGFEPKERCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRTKILYAINSNAGFELS 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1787 1164 Gene3D Hect, E3 ligase catalytic domain 1039 1163 - -
Lal1g1787 1164 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1164 - -
Lal1g1787 1164 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1164 IPR044611 GO:0000209|GO:0061630
Lal1g1787 1164 Pfam HECT-domain (ubiquitin-transferase) 851 1164 IPR000569 GO:0004842
Lal1g1787 1164 Gene3D Hect, E3 ligase catalytic domain 922 1001 - -
Lal1g1787 1164 Gene3D Hect, E3 ligase catalytic domains 798 1036 - -
Lal1g1787 1164 ProSiteProfiles HECT domain profile. 820 1164 IPR000569 GO:0004842
Lal1g1787 1164 CDD HECTc 796 1162 IPR000569 GO:0004842
Lal1g1787 1164 SMART hect_3 814 1164 IPR000569 GO:0004842
Lal1g1787 1164 SUPERFAMILY Hect, E3 ligase catalytic domain 796 1157 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1787 Lal-Chr1 20226988 20236637 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1787 K10588 - gmx:100527169 1860.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1787 1 20226988 20236637 Lal1g1787 1 20226988 20236637 ECH