Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1711 ATGAGCGCCAATTCGTTACCGTCAGATTCGTCTCACGATCTCGACGAACAGATCTCGCAGCTCATGCAGTGCAAACCACTCTCCGAGCCACAGGTTAAAGTTTTATGTGAGAAGGCTAAGGAGATTTTAACGGATGAGAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGAAAGTGTCCAGACACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTGACACTTCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACTATTCTGAGAGGAAACCATGAAAGCCGTCAGATTACCCAAGTATATGGATTTTACGATGAATGCCTAAGAAAATGCGCTGATGTGGCTGGATTGATATCACACCTAATTGGATCTAGATTCCGATGCAGCTTGGCTTCTGGGGGGTCGAACCCTTTGCCAGGCTCAATTTTGATCTTAGCTTATTGGTATGGTAGTGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCATTGACGGCATTGGTTGAATCAGAAATTTTCTGTTTGCATGGTGGACTGTCCCCTTCAATCGAGACCCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCTATGTGTGATCTTTTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGTATCTCTCCTCGTGGTGCTGGATACACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGCGCACCTAACTATTGTTACCGATGTGGGAACATGGCTTCAATATTGGAAGTTGACGATTGCAAAAACCACACATTTATCCAGTTTGATCCTGCTCCAAGAAGAGGAGAACCTGATGTCACGCGTAGAACCCCTGATTACTTCCTCTAA 1056 0.4366 MSANSLPSDSSHDLDEQISQLMQCKPLSEPQVKVLCEKAKEILTDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKCADVAGLISHLIGSRFRCSLASGGSNPLPGSILILAYWYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKNHTFIQFDPAPRRGEPDVTRRTPDYFL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1711 351 Pfam Calcineurin-like phosphoesterase 55 284 IPR004843 GO:0016787
Lal1g1711 351 Gene3D - 8 351 IPR029052 -
Lal1g1711 351 SMART pp2a_7 27 335 IPR006186 GO:0016787
Lal1g1711 351 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Lal1g1711 351 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 179 351 - -
Lal1g1711 351 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 143 - -
Lal1g1711 351 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 179 351 - -
Lal1g1711 351 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 143 - -
Lal1g1711 351 SUPERFAMILY Metallo-dependent phosphatases 11 336 IPR029052 -
Lal1g1711 351 CDD MPP_PP2A_PP4_PP6 13 335 - -
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 219 246 IPR006186 GO:0016787
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 275 295 IPR006186 GO:0016787
Lal1g1711 351 PRINTS Serine/threonine phosphatase family signature 297 313 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1711 Lal-Chr1 19559311 19565018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1711 35 281 Calmodulin-binding Proteins AT5G63870 29.965 5.91e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1711 K04382 - ath:AT3G58500 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1303 11 16686804 16692393 Lal1g1711 1 19559311 19565018 LSH
Lal1g1711 1 19559311 19565018 Lal20g0227 20 1593791 1603960 LSH