Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1706 ATGGGGAATCCACCACTCTTGCTCATCCAAATCATCATCTTATTCATTTTCACCCAATCACTCTTCGCCACGTCACACCCACCTAACCCAATCCCTATAACCGTTTCCGTCTCCGACTTCGGAGCCATCGGCGACGGCATCCACTACGACACCGTCCCCATCCAGTCCGCCATAAACTCCTGCCCGTCCACCTTCCCCTGCCACGTCACCTTCCCGGCGCCGAGGAAATACTTGACGGCGACGGTGTTCCTGAAATCCGGCGTCGTGTTAAACGTGGAACGAGGTGCGACGATCCTGGGAGGGACGAGGGTTGAAGACTATCCAAGGGAGTCATCGCGGTGGTACGTGGTGTTGGCGGAGAACGCGACGGACGTCGGGATCGGAGGCGGTGGAGTGGTGGATGGACAAGCGGAGAAGTTTGTGGTGAGAGAAGATCGAAGGAAGAACGTGATGGTGAGTTGGAATGAAACAGGGGAGTGTTTGGGAGATGAATGCAGACCTAGACTTGTTGGTTTCTTGGATTCCATCAATGTTAGACTTTCCAACATTACTCTCAATCAACCTGCTTATTGGTGCTTACACATAGTAAGGAGTAACAAAATATCCATTGAGGATACTACAATATATGGAGACTTCAATATACCAAACAATGATGGGATAGACATAGAGGACTCAAATAACACAGTAATCACTCGATGCCACATTGATACAGGTGATGATGCAATCTGTCCAAAGTCATACACTGCTCCTGTTTACAACCTCACTGTCACAAACTCTTGGATTCGATCCAAATCTTCGGCAATTAAACTCGGCAGCGCTAGTTGGTTTGATTTCAGCCACTTTGTGTTTGACAATATCACTATTGTAGACTCTCACAGAGGACTTGCATTCCAAATCCGTGATGGAGGTGGAAATGTAAGTGACATTGTGTTCTCAAACATAAATATCAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAGCCTATTTATGTCACATCTTGCCCAAGAGACTCAACCTCAAAGGAGGCTTCAATCTCAAATATACATTTCATTAACATCACTGCAAATTCTGAAAATGGCATCTTCTTATCTGGTTCAAAGAGAGGGTTGTTAAGAAATTTGAGATTCATCAACATGAATATCACTTATACAAGGTTCACCAATTATTCTGGTGGGTTATTGGATTACAGGCCAGGATGCCAAGAATTGGTGAAACATGGAACAGCAGGTATGATGATGGAACACATTGAAGGTATTGAGGTTAGAAATGTAGAAATGAGATGGTCAAATTATGAACTAGAGCAATGGAATAATCCTTTGGAGTTTAAGCCATCTACTGTGAACAACATTTCTTTTCTTAATTTTAACTCTGGTTTGTATACAAATACAAATCAAGTTAACAACTTTTTCTGA 1422 0.4388 MGNPPLLLIQIIILFIFTQSLFATSHPPNPIPITVSVSDFGAIGDGIHYDTVPIQSAINSCPSTFPCHVTFPAPRKYLTATVFLKSGVVLNVERGATILGGTRVEDYPRESSRWYVVLAENATDVGIGGGGVVDGQAEKFVVREDRRKNVMVSWNETGECLGDECRPRLVGFLDSINVRLSNITLNQPAYWCLHIVRSNKISIEDTTIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYTAPVYNLTVTNSWIRSKSSAIKLGSASWFDFSHFVFDNITIVDSHRGLAFQIRDGGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISNIHFINITANSENGIFLSGSKRGLLRNLRFINMNITYTRFTNYSGGLLDYRPGCQELVKHGTAGMMMEHIEGIEVRNVEMRWSNYELEQWNNPLEFKPSTVNNISFLNFNSGLYTNTNQVNNFF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1706 473 SMART pbh1 306 328 IPR006626 -
Lal1g1706 473 SMART pbh1 225 246 IPR006626 -
Lal1g1706 473 SMART pbh1 343 368 IPR006626 -
Lal1g1706 473 SMART pbh1 198 224 IPR006626 -
Lal1g1706 473 SMART pbh1 251 272 IPR006626 -
Lal1g1706 473 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 24 462 - -
Lal1g1706 473 SUPERFAMILY Pectin lyase-like 18 399 IPR011050 -
Lal1g1706 473 Gene3D - 16 395 IPR012334 -
Lal1g1706 473 Pfam Glycosyl hydrolases family 28 81 387 IPR000743 GO:0004650|GO:0005975
Lal1g1706 473 PANTHER PECTIN LYASE-RELATED 24 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1706 Lal-Chr1 19506641 19509413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1706 19 464 Glycoside Hydrolase AT3G57790 66.231 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1706 - - gmx:100794954 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1706 1 19506641 19509413 Lal1g1706 1 19506641 19509413 ECH