Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1697 ATGCTTCATCATCCTCAAACTCAACAACCTCTTCAACCACAATACTACTTTCCCACCTTTGAGGAACATTACAGAAACCTCTCCAAACAACTTCTCTCTCTAACTCACTCTCGTTCCCTCCCCAAAGGTCTCCAAATCCATGCCCATATCCTTAAATCAGGTCTTCAAGCTATTCCTCTTCTCTACCACCACCTAATTAACTTCTACTCCAAAACCCAACTCCCTCATTCTGCACACCAAGTGTTTGATGAAAGTCCACAAAGAAGTTCCACTACTTGGAGCTCTGTTATCTCTTCCTTCGCCCAAAATGAGCTCCCTTTATACGCCCTTGACTTTTTTCGCCGAATGCTCCTTCATGGGGTTCGACCTGATGACCATATATTTCCGAGTGCGACGAAGTCTTGCGCCATTTTGGCCCGGTTTGATGTCGGGCAATCGCTGCATTGCTTTGCTGTGAAGACTGGGTATGATACTGATGTGTTTGTTGGGAGCTCTATTGTTGATATGTATTCGAAATGTGGGGAAATAGCGTATGCTCGTAAGGTGTTTGATGGAATGCCGGAGAGAAATGTTGTTTCTTGGAGTGGGATGATATATGGGTATACCCAAATGGGTGAGGATGAGGAAGCGCTGAGGTTGTTTAAACAAGTGTTGGTGGAAGATGATGTGGGTGTTAATGATTTTACATTGTCCAGTGTTTTGCGCGTTTGCAGCGGTTCCACGCTGTTTGAATTGGGGAAGCAGATACATGGGTTATGTTTTAAGACGAGCTTTGATTCTTCATGCTTCGTAGGTAGTTCGTTAATCTCGTTGTACTGTAAATGTGGGGTTGTTGAAGGGGCTTACCAGGTTTTCGAGGAGGTGCGGGATAGAAACCTTGGCCTGTGGAATGCAATGCTGATTGGGTGTGCTCAGCACGCACACACGAATAAGACTTTCGAGCTATTCAAACAGATGGGAAATGTTGGGATGAAGCCTAATTTCATTACCTTTTTGTCTGTGCTTTATGCTTGCAGCCATGCTGGGTTAGTAGAGAGGGGCAAATACTACTTTGAGCTGATGAAAGACTATGGTATTGAACCAGGGTGGCAACATTATGCCACCATGGTGGATTTACTTGGCCGTGCTGGGAAATTGCACGAGGCAGTTCAGGTGGTTAAAGAAATGCCTATGGAACCGACAGAATCTGTTTGGGGAGCTTTATTAACCGGGTGTAGAATACATGGGAATAATGAATTGGCATCCTATGTAGCTGATAGAGTTTTTGAGTTGGGTCCTGTAAGCTCAGGTGTTCATGTCCTACTGTCTAATGCTTATGCTGCTGCAGGAAGATGGGAGGAAGCAGCAAGAGCACGGAAGATGTTGAGGGACCAAGGAATGAAGAAGGAAACTGGTTTGAGTTGGGTGGAAGAGGGAAATAGAATGCACACATTTGCAGCAGGAGATAGATCACATGCAAAAACTGCAGAAATTTATAACAAGTTAGAAGAGTTAGGAGAAGAAATGGAGAAAGCTGGTTATGTTGCAGACACATCTTTTGTGTTGAAAGAAGTGGACGGTGATGAGAAGAATCAAACTATTAGGTATCACAGCGAAAGATTAGCCATAGCATTTGGCCTTGTTACTTTCCCTAACGAAAGACCAATCAGAGTAATGAAAAATTTGCGTGTTTGTGGTGATTGCCACACTGCAATCAAGTTTATTAGCAAATGTGCTGGGAGGGTAATCATTCTGAGAGATAATAACCGGTTCCACCGTTTTGAGGATGGAAAATGCACTTGTGGAGATTATTGGTGA 1797 0.4385 MLHHPQTQQPLQPQYYFPTFEEHYRNLSKQLLSLTHSRSLPKGLQIHAHILKSGLQAIPLLYHHLINFYSKTQLPHSAHQVFDESPQRSSTTWSSVISSFAQNELPLYALDFFRRMLLHGVRPDDHIFPSATKSCAILARFDVGQSLHCFAVKTGYDTDVFVGSSIVDMYSKCGEIAYARKVFDGMPERNVVSWSGMIYGYTQMGEDEEALRLFKQVLVEDDVGVNDFTLSSVLRVCSGSTLFELGKQIHGLCFKTSFDSSCFVGSSLISLYCKCGVVEGAYQVFEEVRDRNLGLWNAMLIGCAQHAHTNKTFELFKQMGNVGMKPNFITFLSVLYACSHAGLVERGKYYFELMKDYGIEPGWQHYATMVDLLGRAGKLHEAVQVVKEMPMEPTESVWGALLTGCRIHGNNELASYVADRVFELGPVSSGVHVLLSNAYAAAGRWEEAARARKMLRDQGMKKETGLSWVEEGNRMHTFAAGDRSHAKTAEIYNKLEELGEEMEKAGYVADTSFVLKEVDGDEKNQTIRYHSERLAIAFGLVTFPNERPIRVMKNLRVCGDCHTAIKFISKCAGRVIILRDNNRFHRFEDGKCTCGDYW 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1697 598 Pfam DYW family of nucleic acid deaminases 506 598 IPR032867 GO:0008270
Lal1g1697 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Lal1g1697 598 Pfam E motif 408 470 IPR046848 -
Lal1g1697 598 Pfam PPR repeat 366 390 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 92 121 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 164 191 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 296 321 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 266 292 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 329 359 IPR002885 -
Lal1g1697 598 Pfam PPR repeat 192 217 IPR002885 -
Lal1g1697 598 Pfam E+ motif 476 502 IPR046849 -
Lal1g1697 598 PANTHER OS01G0913400 PROTEIN-RELATED 17 541 - -
Lal1g1697 598 Gene3D Tetratricopeptide repeat domain 21 145 IPR011990 GO:0005515
Lal1g1697 598 Gene3D Tetratricopeptide repeat domain 264 526 IPR011990 GO:0005515
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 296 327 IPR002885 -
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 267 292 IPR002885 -
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 192 217 IPR002885 -
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 92 124 IPR002885 -
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 366 389 IPR002885 -
Lal1g1697 598 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Lal1g1697 598 Gene3D Tetratricopeptide repeat domain 146 250 IPR011990 GO:0005515
Lal1g1697 598 PANTHER BNAA10G28390D PROTEIN 17 541 - -
Lal1g1697 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lal1g1697 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lal1g1697 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1697 Lal-Chr1 19420963 19422759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1697 20 598 Glycoside Hydrolase AT3G49170 37.012 4.43e-134 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1697 - - lang:109356914 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1697 1 19420963 19422759 Lal1g1697 1 19420963 19422759 ECH