Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1693 ATGTCCCTCCAAAGACATATTCTCTCATTATTCATCATTATTATTGTTTCTTTTGGTGCTTGTTATTGTAGCAAAGTACAAGAGGGCCCACTTAGTAGTATAAATGTTCATGATTCACCTTCCATTGATGATGATTATGGTTGGACATTCAAGAACTTTATCAAACAAACCATTGATTTTTTTAGCTCCAATGAAGTTGTCAATGAGGGTTGCACTAAGCCTTTGCTTAGAACTATTAATGTCAATGATTATGGAGCTATAGGGAATGGTCTTGATGATAACTCAGTGGCATTCAAGGAGGCTTGGCAAGCAGCATGTTCTTATGATGGGGATGTAATTCTTGTGGTTAGTGAGGGAGATTATCTACTCAAACCAATCAAATTCTCTGGTCCTTGCAAATCCAACATTACGGTCGAGATTTGTGGAACTCTTGAAGCATCAAATGAGCGATCAGATTACAGTGGATATTTCAAAAGATACTGGATTATATTTGATAGTGTTGAGAAACTATCAGTTAATGGTGGTGGAACCCTCAATGGAAATGGCAACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAAGAAGCCTTGCAAGGATGCCCCTACGGCTGTGACTTTCCATAAGTGCAAGGATTTAACAGTTGAAGACTTAACTATAGTAAATGCCCAACAAATGCATGTTAGAATTCAGGATACTGTGAATGTTAATGCTTCTGGTCTCAAAGTGACTGCACCAGAGAATAGCCCTAACACTGATGGGATTCATGTTACCAATAGCCAAATTGTACAAATCTCAAGCTCAGTTATAGGAACTGGTGATGATTGTATATCAATTGTAGATGGAACCAGTGAATTAATAGCCACAGACATAACCTGTGGACCAGGGCATGGTATTAGTATTGGAAGTTTAGGGGCTAGAGGTGCCAAGGAATTTGTTACAGGAATTAAAGTGAATGGAGCTAAGCTTTCTGGTACTAAAAATGGAGTTAGAATTAAAACTTGGCAGGGAGGTTCAGGAATGGCAAGCAACATTGAGTTTAGGAACATTGAAATGGAGAATGTGACCAACCCCATAATAATAGACCAGAATTACTGTGACAAAAAGGAGTCATGCCAAAAACAGAAATCTGCAGTTCAGATTAAGAATGTGTTGTACCAAAACATTAGTGGTACAAGTGCTTCTGATGTAGCTGTGAATTTTGATTGCAGTGAAAGCTTTCCATGCAAGGGTATAATAATGCAAAATATAGATCTTCAAGGTGAAGGAGGAAAATATGTTGAAGCTTCATGCAACAATGTTCAATTCTCTTACTTAGAAGATGTTAACCCTAGTTGCTGTTCATAG 1347 0.3786 MSLQRHILSLFIIIIVSFGACYCSKVQEGPLSSINVHDSPSIDDDYGWTFKNFIKQTIDFFSSNEVVNEGCTKPLLRTINVNDYGAIGNGLDDNSVAFKEAWQAACSYDGDVILVVSEGDYLLKPIKFSGPCKSNITVEICGTLEASNERSDYSGYFKRYWIIFDSVEKLSVNGGGTLNGNGNIWWENSCKRNKKKPCKDAPTAVTFHKCKDLTVEDLTIVNAQQMHVRIQDTVNVNASGLKVTAPENSPNTDGIHVTNSQIVQISSSVIGTGDDCISIVDGTSELIATDITCGPGHGISIGSLGARGAKEFVTGIKVNGAKLSGTKNGVRIKTWQGGSGMASNIEFRNIEMENVTNPIIIDQNYCDKKESCQKQKSAVQIKNVLYQNISGTSASDVAVNFDCSESFPCKGIIMQNIDLQGEGGKYVEASCNNVQFSYLEDVNPSCCS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1693 448 PANTHER ENDO POLYGALACTURONASE 9 447 - -
Lal1g1693 448 SUPERFAMILY Pectin lyase-like 72 447 IPR011050 -
Lal1g1693 448 Pfam Glycosyl hydrolases family 28 106 435 IPR000743 GO:0004650|GO:0005975
Lal1g1693 448 SMART pbh1 210 259 IPR006626 -
Lal1g1693 448 SMART pbh1 342 363 IPR006626 -
Lal1g1693 448 SMART pbh1 313 334 IPR006626 -
Lal1g1693 448 SMART pbh1 260 281 IPR006626 -
Lal1g1693 448 Gene3D - 65 445 IPR012334 -
Lal1g1693 448 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Lal1g1693 448 PANTHER - 9 447 - -
Lal1g1693 448 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1693 Lal-Chr1 19356859 19361411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1693 5 446 Glycoside Hydrolase AT3G57510 47.991 2.43e-140 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1693 K01184 - gmx:100797601 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1693 1 19356859 19361411 Lal1g1693 1 19356859 19361411 ECH