Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1684 ATGTCCACCACAACACTTCACTCCACTTATAACCTCAAACTCACCGATTCAACTCGCCCTCACATCACTTGCAAACGCAAACCGAACGAGTTAACATTCAAGGAGACTCAGCAAGGTTTCGTTGACTACGACAATGGCCACCACGACGTTTCCAACAAGGTCACCGGAATCCTCAAGGACGGAATCCCCGCCCGTTACCGAATCCGAGTCGCCGGAAACCGATTCCAGAAGGATTGGACCGTTTCTGAGGTGGTTGAATTGGTTCTCAACCTCGACCTTCGTGATGATATTGACGGTTTACTCAACCGCTGGGTAGGACGCTTCGCACGCAAGAATTTCCCTTACCTTATTAAGGAGTTGAGTCAGAGAGGGAATATTGAACATTGTAACTCCGTTTTCGAGTGGATGAAGAAGCAAAAGAATTACTGTGCTCGAAATGATATATACAATATGATGATAAGGTTGCACGCAAGGCATAATCGAGTAGACCAGGCACGTGGCTTATTTTTTGAGATGCAAAAGTGGAGGTGCAAGCCTGATGTTGAGACTTATAATGCAATTATCAATGCACATGGTCGAGCTGGACAATGGCGTTGGGCTAAGAATATCATGGAAGACATGCTACGTGCAGCTATAGCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCGCTTAATATTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTCACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCCAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCAGACACAACTACTCTTAATATTATCATCCATTGTCTAGTGAAGCTTGGACAATATGACAATGCCATTGTTATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGCCATCCTGATGTTGTAACTTTCACTAGTGTCATCCACTTGTATTCTGTATGTGGGCAAGTTGAAAATTGTGGGGCTGCGTTCAGTATGATGCTTGCAGAAGGGCTGAAACCAAATATAGTTTCATATAATGCACTAATAGGTGCATATGCTGCTTGTGGGATGGACAAGGAAGCATTTTCTGTTTTCAGTGAAATAAATCAGAATGGTTTACGCGCAGATATTGTATCCTATACATCTCTGCTTAATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTTGAAATGATAAAGAGGAACAAGTTGAAGCCAAACGTTGTCAGCTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGTTGGCTGAGGCAATTGAAATCTTGCGTGAGATGGAGAATGATGGGATTTATCCAAATGTGGTCTCAATATGCACTCTCTTGGCTGCCTGTGGACGATGCAGTAAGAAGGTGAAGATTGATACAGTGCTATCAGCAGCAGAGATGCGAGGCATTAAATTGAATACATTTGCATATAATTCAGCTATAGGAAGCTATATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATAAAACCTGATTCTGTTACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTAAGGAAGACATGATGCAAATAGAACTTCCTTTGTCCAAAGAGGTCTACTCATCTATCATATGTGCCTACAGCAAACAAGGCCAAATCGTGGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACTGCAATGCTTGATGCATACAATGCAGCTGAGAATTGGGAGAAAGCATATGCACTCTTTGAAGAAATGGAAATAAATGGCATCAAGCTAGATACAATTGCATGTGCAGCCCTAATGCGAGCTTTCAATGAAGGTGGCCAATCTGGAAGGGTCCTTAGTCTTGCAAAGAATATGCAAGAAAAAGAGATTCCTTTTAGCGATGCCATCTTTTTTGAAATGGTATCTGCCTGCAGCTTATTACATGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTATTCCTGCAATTTTTAGGAAATAGCGGAAAAAATGAAACTATGTTGAAGTTATTCTACAAAATGCTTGCATCGGGTGCTGAAGTACTGGAATGGATGGAAGATGCAGGAATTTATCCATCAATTGGAATGTACCGCGATTTATCCTCCTTTTCACAAAGGTGTTGTGGGCAAGAAAATGCTGCAATCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCAGGGAACAACCAAGTCTCTGCAAGCCAAACCGAATCTCCCATCCTTTGTTGA 2412 0.4071 MSTTTLHSTYNLKLTDSTRPHITCKRKPNELTFKETQQGFVDYDNGHHDVSNKVTGILKDGIPARYRIRVAGNRFQKDWTVSEVVELVLNLDLRDDIDGLLNRWVGRFARKNFPYLIKELSQRGNIEHCNSVFEWMKKQKNYCARNDIYNMMIRLHARHNRVDQARGLFFEMQKWRCKPDVETYNAIINAHGRAGQWRWAKNIMEDMLRAAIAPSRSTYNNLINACGSSGNWKEALNICKKMTDNGVGPDLVTHNIVLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIIIHCLVKLGQYDNAIVIFNSMREKKSECHPDVVTFTSVIHLYSVCGQVENCGAAFSMMLAEGLKPNIVSYNALIGAYAACGMDKEAFSVFSEINQNGLRADIVSYTSLLNAYGRSQKPQKAREVFEMIKRNKLKPNVVSYNALIDAYGSNGLLAEAIEILREMENDGIYPNVVSICTLLAACGRCSKKVKIDTVLSAAEMRGIKLNTFAYNSAIGSYMNVGEYDKAIGLYKSMRKKKIKPDSVTYTVLISGCCKMSKYGEALSFKEDMMQIELPLSKEVYSSIICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEINGIKLDTIACAALMRAFNEGGQSGRVLSLAKNMQEKEIPFSDAIFFEMVSACSLLHDWRTAVDMIKYIEPSLPVISSGCLNLFLQFLGNSGKNETMLKLFYKMLASGAEVLEWMEDAGIYPSIGMYRDLSSFSQRCCGQENAAIIKERLESLKRKSGNNQVSASQTESPILC 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Lal1g1684 803 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 21 760 - -
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 238 314 IPR011990 GO:0005515
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 457 561 IPR011990 GO:0005515
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 315 386 IPR011990 GO:0005515
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 387 456 IPR011990 GO:0005515
Lal1g1684 803 Pfam Pentatricopeptide repeat domain 625 669 IPR002885 -
Lal1g1684 803 Pfam Pentatricopeptide repeat domain 379 441 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Lal1g1684 803 SUPERFAMILY TPR-like 286 590 IPR011990 GO:0005515
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 82 227 IPR011990 GO:0005515
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Lal1g1684 803 PANTHER OS07G0213300 PROTEIN 21 760 - -
Lal1g1684 803 Gene3D Tetratricopeptide repeat domain 562 676 IPR011990 GO:0005515
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Lal1g1684 803 Pfam PPR repeat family 570 613 IPR002885 -
Lal1g1684 803 Pfam PPR repeat family 216 261 IPR002885 -
Lal1g1684 803 Pfam PPR repeat family 148 190 IPR002885 -
Lal1g1684 803 Pfam PPR repeat family 284 331 IPR002885 -
Lal1g1684 803 Pfam PPR repeat family 497 545 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 288 317 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 429 463 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 183 215 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 534 560 IPR002885 -
Lal1g1684 803 TIGRFAM PPR: pentatricopeptide repeat domain 604 638 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Lal1g1684 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1684 271 760 Glycosyltransferase AT1G05670 24.187 2.29e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1684 - - ahf:112696020 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1684 1 19275953 19284361 Lal1g1684 1 19275953 19284361 ECH