Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1673 ATGCAGAGAGCTATAGAAACCCTACTGAATATACCCCCACCGGTATTTGACAGGAACGGAGGTAGAGAAATATTGACCAGGGTTGGCATGAATTTGTGCTCGCTTTCTTCTGCAGTTTCAGCTGAAACTTCGGATTTAGAACATGACGAGACACATGATATTGTCAAAGCAACAGAGAGAGCCGATGCACTTCGTTTGGCGGTCTCACAGCTTGCTAGCGAGTTTAGCAAGGAGTCAATGCTATCCATGCAGAAGTTTTTTGGTGTCCGCCGTGCTCGTGTGGTACCTTCAGGCTCCTTGAAGCTTGACTTAGCTCTTGGAATTGGAGGATTACCAAAGGGTAGGATGGTAGAAATTTATGGCCGAGAAGCAGCTGGTAAGACAACACTCGCACTTCATGTTATTAAAGAAGCTCAAAAGCTTGGAGGATACTGTGCATATCTTGATGCAGAACATGCATTGGACCTTTCACTTGTAGAAGCAATGGGTGTAAATACCAAAAACCTTCTTATCTCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTTGACACATTGACCAAAAGTGGAGCTGTAGATGTGATTGTGGTTGATAGTGTTGCCGCCCTCATCCCGAAATTGGAACTTGATGGATTAGGAGTTACCACCAAGCAAGATTTTCTATCGCGAATGATGACTCAAGCACTCCGGAAAATTCATTATTCATTATCTCACTCCCAAACTCTTATAATTTTTGTTAATCAGATTCGATTTAGTCCGAAAAAATCGGTTAAAGGGTGTGGACCTATGGAGGAGGTCACTTGTGGTGGAAACGCCTTGAGATTCTATGCAGCTCTTCGTTTAAGGCTTTCAAGTATCGGATTGATCAAAACTGAAGATAAGGTAGAGGGTCTTCAGGTCTCGGTGCAAGTGGTAAAAAATAAACTAGCACCATTAGCGATGAAAAAGGCTGAACTAGGCATCAAGTTTGGAAGAGGCTTTTGCCATGAAAAAGAGGTCTTAGATTTGGCTTGTGAACATGGAATCATTGTGGAATATGAGGGGAACTACTTTATTGAAGGGCAAAGTTTTAATAGTAGAGAAGCATCTGAACTTTATTTGGCTAAAAATGACAGGGTTTGTGACAAATTGGTTATGGACTTAAGAAGACTTTATTTTTTACAAATCTAG 1173 0.4152 MQRAIETLLNIPPPVFDRNGGREILTRVGMNLCSLSSAVSAETSDLEHDETHDIVKATERADALRLAVSQLASEFSKESMLSMQKFFGVRRARVVPSGSLKLDLALGIGGLPKGRMVEIYGREAAGKTTLALHVIKEAQKLGGYCAYLDAEHALDLSLVEAMGVNTKNLLISHPDCAENLLSMVDTLTKSGAVDVIVVDSVAALIPKLELDGLGVTTKQDFLSRMMTQALRKIHYSLSHSQTLIIFVNQIRFSPKKSVKGCGPMEEVTCGGNALRFYAALRLRLSSIGLIKTEDKVEGLQVSVQVVKNKLAPLAMKKAELGIKFGRGFCHEKEVLDLACEHGIIVEYEGNYFIEGQSFNSREASELYLAKNDRVCDKLVMDLRRLYFLQI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1673 390 ProSiteProfiles RecA family profile 2. 262 333 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal1g1673 390 ProSiteProfiles RecA family profile 1. 91 250 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lal1g1673 390 Pfam recA bacterial DNA recombination protein 63 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 ProSitePatterns recA signature. 273 281 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal1g1673 390 Coils Coil 54 74 - -
Lal1g1673 390 PANTHER RECA 25 387 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 SMART AAA_5 113 288 IPR003593 -
Lal1g1673 390 PRINTS RecA protein signature 149 178 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 PRINTS RecA protein signature 183 212 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 PRINTS RecA protein signature 221 250 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 PRINTS RecA protein signature 270 298 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 PRINTS RecA protein signature 304 333 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal1g1673 390 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 25 387 - -
Lal1g1673 390 Gene3D - 90 387 IPR027417 -
Lal1g1673 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1673 Lal-Chr1 19171416 19176307 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1673 - - aip:107645515 551.206