Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1613 ATGTATCGAACACCACTCTCGAACATACATTCTACTATTGATTCCTTAATCAATGCCCTTAGGCCACTAGTTATCATTTGCCTAGATTCATTTTTTAAGGTTAAGGAGTTTGGCAACATGGGAGGTGGGTTTAGAGTGCTTCACTTAGTTAGGCCGTTTCTTTCATTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTACCATTCAGAGAGAAGGTCATATATACCGTGATCTCTCTTTTCATTTTCCTGGTTTGTAGTCAGCTCCCTCTGTATGGAATACACTCAACAACAGGTGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGTACCGTCATGGAGCTCGGAATTACTCCCATTGTTACTTCTGGATTGGTAATGCAGCTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTCCGAGAGGATCGGGCCCTCTTAAATGGAGCACAGAAGCTACTTGGTATCTTGATAGCTGTTGGAGAGGCAGTTGCATATGTTCTCTCTGGGATGTATGGTAGTGTGGGCCAGCTTGGAGTGGGAAATGCCATCCTCATCATCATCCAGCTGTGTTTTGCGGGTATAATTGTGATATGTTTAGACGAGCTTCTTCAAAAGGGATATGGTCTGGGCTCTGGAATTTCCCTATTTATAGCGACCAATATCTGTGAAACCATTATATGGAAAGCATTTAGTCCTACTACCATTAATAGTGGTCGCGGAGCTGAATTTGAGGGTGCTGTTATTGCTCTGTTCCATTTGTTGATAACAAGGACAGACAAGGTTCGTGCTCTTCGTGAGGCGTTTTACCGGCAGAATCTTCCTAATGTGACAAATCTGTTGGCTACTGTCTTGATCTTCCTGATTGTGATATACTTCCAAGGTTTCCGTGTGGTCTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCTATCAAACTGTTTTATACTTCCAACATGCCTATCATTCTCCAGTCAGCCCTTGTTTCAAATCTCTACTTCATCTCTCAGCTGCTCCACCGAAAGTACAGTGGAAACTTCCTAGTAAACCTGTTGGGAAAATGGAAGGATTCTGAATATGGAGGCGGTCATTCTATTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGCTTAGCTGATATGGCAGCCAACCCTTTCCATGCTTTGTTCTATCTTGTGTTTATGCTGTCAGCTTGTGCCCTCTTCTCAAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACACCGTGAGTCAAACTTGCAGAAAGAGCTGAACCGATACATTCCCACGGCTGCGGCATTTGGAGGCATTTGTATTGGTGCCCTGACAGTGTTGGCAGATTTTATGGGGGCAATTGGTTCAGGGACAGGGATACTGCTTGCAGTAACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA 1548 0.4419 MYRTPLSNIHSTIDSLINALRPLVIICLDSFFKVKEFGNMGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFLVNLLGKWKDSEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1613 515 SUPERFAMILY Preprotein translocase SecY subunit 49 505 IPR023201 -
Lal1g1613 515 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 40 515 IPR002208 GO:0015031|GO:0016020
Lal1g1613 515 Pfam SecY 116 498 IPR002208 GO:0015031|GO:0016020
Lal1g1613 515 ProSitePatterns Protein secY signature 1. 116 135 IPR030659 -
Lal1g1613 515 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 70 506 IPR002208 GO:0015031|GO:0016020
Lal1g1613 515 Gene3D SecY subunit domain 48 513 IPR023201 -
Lal1g1613 515 Pfam Plug domain of Sec61p 81 115 IPR019561 -
Lal1g1613 515 PANTHER F9K20.24 PROTEIN 40 515 - -
Lal1g1613 515 PIRSF SecY_Sec61alpha 47 510 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1613 Lal-Chr1 18550632 18554406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1613 40 515 Miscellaneous Gene Families AT2G34250 93.067 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1613 K10956 - gmx:100809703 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1613 1 18550632 18554406 Lal1g1613 1 18550632 18554406 ECH
Lal20g0388 20 3081475 3085228 Lal1g1613 1 18550632 18554406 LSH