Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1375 ATGTTTTCATCAGTTCCAGTAGTAGGTGGACTCTTCAACAAGGGTCACAGGGTTAAGGGAACTGTGGTGTTAATGGGCAAGAATGTGTTGGATTTCAATGAGATAACAGCGGCGGCTGGTGGCGGCATTGGTGGGGCTCTGGGAGGAGCGTTAAACGTTGTTACCGGAGCACTTGGCTCAGCTGTTGATGGTGCTACTGCCATCTTCAGCCGGAACATTGCCCTTCAGTTGATCAGTGGGACAAAGACTGATGGACATGGAAATGGGAAAGTTGGAAAGCAAACATATTTGGAGAAACATCTTCCAACGTTACCAAACTTAGGAGCTGCACAAGATGCATTTGATATATTTTTTGAATGGGATGATGATTTTGGAATTCCAGGAGCATTTTACATTAAAAACTTTATGAGTGTTGAATTTTTTCTTGTTAGTGTTACTCTTGAAGATATTCCAAATCATGGGTCCATTCACTTTGATTGCAACTCATGGATTTACAATGCTAAAAATTACAAAAGTGACCGCATTTTCTTTATCAATCAGACATACCTTCCAAGTGAAACTCCTGCTGCACTAGTCAAGTACAGAGAAGAGGAATTGAAAACTTTAAGAGGAGATGGAAAAGGTGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTCTACAACGATTTGGGAAACCCGGACAAAGATGCAAAAAATGCTCGTCCTGTTCTCGGAGGGTCTAGCACACATCCTTACCCTCGCAGGGGAAGAACTGGTAGAAAAGCAACAAGGAAAGATCCTAAGAGTGAGACGCCGAGCTCAAGTGTGTATGTTCCAAGAGATGAAAATTTCGGTCACTTGAAATCGTCAGATTTCCTTACATATGGAATAAAATCGATATCACAAACTCTCTTGCCTACTTTCACTTCTAAAATTTTTAGTGAGTTCAATAGCTTCGATGAGGTGCGCGGTCTCTACGATGGTGGAATTCGTCTGCCAACAGATGTGTTTAGCAAAATTAGCCCCTTGCCGGTTCTCAAGGAAATCTTTCGCACTGATGGTGAACAAGTTCTCAAGTTTCCACCACCTAAAGTCATCAATGTTAGTAAATCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTCTCTGGTGTAAATCCTTGCGTAATTCGTCGCCTTCAAGAGTTTCCACCACAAAGCACTCTCGATGCCGCAGTTTATGGTGATCAAGCGAGTACAATAACTAAAGAACACTTGGAGGTTAACCTTGAAGGGGTAACATTTGAAAAGGCACTTAGTGGTCAGAGATTATTCCTATTAGACTATCATGATGCATTCATCCCATTTTTGAGGAAGATCAACGAAATTGCGAAGTCTTATGCTACCAGGACAATCCTTTTCTTGAAAGACGATGGGACTTTAAAGCCACTTGCCATCGAATTAAGTTTGCCACATCCCGATGGAGATCAGTTCGGAGCTGATAGTAAAGTCATCTTGCCTGCAACCGAAGGTGTTGAAAGTACAATTTGGCTATTGGCCAAGGCTTATGTAGTTGTAAATGACTCATGCTATCATCAACTCATGAGCCATTGGTTAAATACACATGCAGCGATGGAGCCATTCATCATAGCAACAAACAGGCACCTAAGTGTGCTTCACCCAATTTATAAACTTTTGTATCCCCACTACCGTGACACTATGAATATCAATGCACTTGCCCGAAGTTCGCTTATTAATGCAAGTGGAATTATAGAGCAAACGTTCTTGCCTGGGCCATATTCGGTGGAGATATCTTCAGCAGTTTATAAGAATTGGGTTTTCCCTGATCAAGCACTACCTGCTGATCTTATCAAGAGAGGATTGGCATCTGAGGATCCTTCTTCGCCCCACGGGCTTCGGCTAGTGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAGATATGGGATGCTATTAAGACATGGGTTCGAGACTACGTCTCGTTGTATTACACGACGAATGAGGCAGTTCAAAAGGACTCTGAACTACAAGCTTGGTGGAAGGATGTTGTAGAGAAAGGGCATGCTGACTTGAAAGACAAGCTGTGGTGGCCTAAGTTGCAGACTGTTGATGAGCTGATCCAATCCAGCTCCACCATCATATGGATCGGTTCAGCTCTTCACGCGGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTGAACCGTCCGACTCTTAGCCGAAGATTGATCCCGGAAAAAGGAACTCCTGAATATGATGAGTTGGGTACAAACCCTCAAAAGGCTTATTTAAGAACAATTACAGCAAAGAGCGAGGCGCTTGTCGACCTTTCGGTGATCGAGATATTGTCAAGACATGCTTCTGATGAGATCTACCTTGGGCAAAGAGATAATCCAAACTGGACATCAGATACAAGGGCATTGCAAGCCTTCCAAAAGTTCGGAACAAAGTTGGCCGAAATCGAAAACAACATCACTAGAAGAAACAACGATTCAAGCCAGAGAAACCGAACTGGCCCGGTTCAACTACCCTACACTTTGCTCCTTCCTACCAGTAAAGAAGGGTTAACTTTCAGAGGAATACCCAATAGTATCTCTATCTAA 2601 0.4283 MFSSVPVVGGLFNKGHRVKGTVVLMGKNVLDFNEITAAAGGGIGGALGGALNVVTGALGSAVDGATAIFSRNIALQLISGTKTDGHGNGKVGKQTYLEKHLPTLPNLGAAQDAFDIFFEWDDDFGIPGAFYIKNFMSVEFFLVSVTLEDIPNHGSIHFDCNSWIYNAKNYKSDRIFFINQTYLPSETPAALVKYREEELKTLRGDGKGERKEWDRIYDYDVYNDLGNPDKDAKNARPVLGGSSTHPYPRRGRTGRKATRKDPKSETPSSSVYVPRDENFGHLKSSDFLTYGIKSISQTLLPTFTSKIFSEFNSFDEVRGLYDGGIRLPTDVFSKISPLPVLKEIFRTDGEQVLKFPPPKVINVSKSAWMTDEEFGREMLSGVNPCVIRRLQEFPPQSTLDAAVYGDQASTITKEHLEVNLEGVTFEKALSGQRLFLLDYHDAFIPFLRKINEIAKSYATRTILFLKDDGTLKPLAIELSLPHPDGDQFGADSKVILPATEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAAMEPFIIATNRHLSVLHPIYKLLYPHYRDTMNINALARSSLINASGIIEQTFLPGPYSVEISSAVYKNWVFPDQALPADLIKRGLASEDPSSPHGLRLVIEDYPYAVDGLEIWDAIKTWVRDYVSLYYTTNEAVQKDSELQAWWKDVVEKGHADLKDKLWWPKLQTVDELIQSSSTIIWIGSALHAAVNFGQYPYGGYILNRPTLSRRLIPEKGTPEYDELGTNPQKAYLRTITAKSEALVDLSVIEILSRHASDEIYLGQRDNPNWTSDTRALQAFQKFGTKLAEIENNITRRNNDSSQRNRTGPVQLPYTLLLPTSKEGLTFRGIPNSISI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1375 866 Gene3D - 367 499 - -
Lal1g1375 866 CDD PLAT_LH2 16 179 IPR042057 -
Lal1g1375 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Lal1g1375 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Lal1g1375 866 Gene3D PLAT/LH2 domain 7 182 - -
Lal1g1375 866 Gene3D - 183 282 - -
Lal1g1375 866 PANTHER LIPOXYGENASE 10 866 IPR000907 GO:0016702|GO:0046872
Lal1g1375 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 16 182 IPR036392 GO:0005515
Lal1g1375 866 SUPERFAMILY Lipoxigenase 183 866 IPR036226 -
Lal1g1375 866 MobiDBLite consensus disorder prediction 228 277 - -
Lal1g1375 866 Pfam Lipoxygenase 191 849 IPR013819 GO:0016702|GO:0046872
Lal1g1375 866 SMART LH2_4 16 179 IPR001024 GO:0005515
Lal1g1375 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 181 866 IPR013819 GO:0016702|GO:0046872
Lal1g1375 866 Gene3D - 283 366 IPR027433 -
Lal1g1375 866 PRINTS Plant lipoxygenase signature 148 166 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 174 195 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 213 229 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 246 265 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Lal1g1375 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Lal1g1375 866 Pfam PLAT/LH2 domain 81 177 IPR001024 GO:0005515
Lal1g1375 866 ProSiteProfiles PLAT domain profile. 47 178 IPR001024 GO:0005515
Lal1g1375 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Lal1g1375 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Lal1g1375 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Lal1g1375 866 Gene3D - 500 865 - -
Lal1g1375 866 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 10 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1375 Lal-Chr1 15712193 15718004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1375 9 866 Acyl Lipid Metabolism Gene Families AT1G55020 57.143 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1375 K15718 - gmx:100127399 1385.93