LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g1359	ATGTTGCTCTCAGGAATAGAATCATTGACATTTTGGTCATCTGGGTATCTATCGGCTTACACCATTAGTGTTAATGAAATTGAGGCATTGCATGAGTTGTTCAAGAAGTTGAGTAGTTCTATAATTGATGATGGTCTCATCCACAAGGAAGAGCTCACATTGGCATTATTGAAGACCCCCGCCGGCGAGAATCTTTTCCTTGACAGGGTGTTCGATCTCTTTGATGAAAAAAGAAATGGTGTTATAGAGTTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCACCCTTATGCTCCGATAGAAGAAAAAACTGATTTTGCTTTTAGATTGTATGACTTGAGACAAACCGGATATATCGAGCGAGAAGAAGTTAATCAAATGGTGGTTGCTATTTTGTCAGAATCCGGCATGAAGCTTGAAGATGAAGTTCTTGAAGCAATTATTGATAAAACATTTCAAGATGCTGATGTTGACAAGGATGACAAGATAAGTAAGGAAGAATGGAAGGCGTTCGTTGTTCGGCACCCGACACTCTTGAAGCACATGACTCTTCCTCATCTGAAGTAA	567	0.3968	MLLSGIESLTFWSSGYLSAYTISVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTPAGENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYAPIEEKTDFAFRLYDLRQTGYIEREEVNQMVVAILSESGMKLEDEVLEAIIDKTFQDADVDKDDKISKEEWKAFVVRHPTLLKHMTLPHLK	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g1359	188	PRINTS	Recoverin family signature	70	91	-	-
	Lal1g1359	188	PRINTS	Recoverin family signature	117	135	-	-
	Lal1g1359	188	PRINTS	Recoverin family signature	163	183	-	-
	Lal1g1359	188	PANTHER	CALCINEURIN B	22	188	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Lal1g1359	188	CDD	EFh	103	172	IPR002048	GO:0005509
	Lal1g1359	188	Gene3D	-	18	188	-	-
	Lal1g1359	188	SUPERFAMILY	EF-hand	19	185	IPR011992	-
	Lal1g1359	188	SMART	efh_1	66	94	IPR002048	GO:0005509
	Lal1g1359	188	SMART	efh_1	147	175	IPR002048	GO:0005509
	Lal1g1359	188	SMART	efh_1	103	131	IPR002048	GO:0005509
	Lal1g1359	188	ProSitePatterns	EF-hand calcium-binding domain.	156	168	IPR018247	-
	Lal1g1359	188	Pfam	EF hand	67	92	IPR002048	GO:0005509
	Lal1g1359	188	ProSiteProfiles	EF-hand calcium-binding domain profile.	62	97	IPR002048	GO:0005509
	Lal1g1359	188	ProSiteProfiles	EF-hand calcium-binding domain profile.	143	178	IPR002048	GO:0005509
	Lal1g1359	188	Pfam	EF-hand domain pair	102	171	IPR002048	GO:0005509
	Lal1g1359	188	ProSiteProfiles	EF-hand calcium-binding domain profile.	99	134	IPR002048	GO:0005509
	Lal1g1359	188	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	22	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g1359	Lal-Chr1	15418439	15422828	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g1359	23	188	EF-hand Containing Proteins	AT4G26570	65.294	1.86e-77	229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g1359	K06268		-	gmx:100306023	298.516