Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1357 ATGGCTCAACAGGCATTGGATCAATATTACTTGTACCAACAAGATGACCGGAGCAGCATCGACACACTCTTCATCTCCGGTCTCCCTGACGACGTCAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGTCCTGGCTTCCATGCCTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTTGTTGCATTTGCTACCTTTTTCAACCATCAATCAGCAATGGCAGCATTGCATGCCTTGAATGGTGTCAAATTTGATCCTCAATCTGGATCTGTTTTACATATCGAACTTGCTAGGTCTAACTCAAGGAGGAAGCATATGCCAGGTAGTAGAGCTTATATCGTTATTGATAAAAGGTCTAATAAAAGGGAAGCTGATGGTCAAGGTTCATCAAGTGATGATGGTGAATTTGAAAGTGACCCTGATGATTCATCAGGAAGTGGCAGCGATCATGGTGATTTAGCAACCACGAAAAGTGATGAGAATGTTGTTGCTTCTGGCAATCCTGTAGTAAGTGCTACCAAGCAATTTGTTGGAACTCCTCAGATTACTGCATTTGAGCAGCATCAAAAGGGTGCTGATGGTGGACCATGTTCCACTCTCTTTATTGCAAATCTTGGTCCAAACTGCACTCATGATGAATTAAAGCAAGCTTTTTCTGTGCATGCTGGATTCAACCTGGTCAAAATGCGTTCTAGAGGAGGAATGCCCGTTGCATTTGCTGATTTCGAGGAAACTGATCAAGCCACCAAGGTCATGGAGCAGCTTCAAGGCAGCTTACTGCCATCATCAGATCGCGGGGGCATGCACATCGAATATGCAAGATCTAAAATGAGGAAGCTTTAG 846 0.4586 MAQQALDQYYLYQQDDRSSIDTLFISGLPDDVKAREIHNLFRRRPGFHACQLKYTGRGNQVVAFATFFNHQSAMAALHALNGVKFDPQSGSVLHIELARSNSRRKHMPGSRAYIVIDKRSNKREADGQGSSSDDGEFESDPDDSSGSGSDHGDLATTKSDENVVASGNPVVSATKQFVGTPQITAFEQHQKGADGGPCSTLFIANLGPNCTHDELKQAFSVHAGFNLVKMRSRGGMPVAFADFEETDQATKVMEQLQGSLLPSSDRGGMHIEYARSKMRKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1357 281 CDD RRM_RBPMS_like 22 96 - -
Lal1g1357 281 SMART rrm1_1 22 96 IPR000504 GO:0003723
Lal1g1357 281 SMART rrm1_1 200 272 IPR000504 GO:0003723
Lal1g1357 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Lal1g1357 281 SUPERFAMILY RNA-binding domain, RBD 22 261 IPR035979 GO:0003676
Lal1g1357 281 PANTHER RNA-BINDING PROTEIN-RELATED 11 270 - -
Lal1g1357 281 MobiDBLite consensus disorder prediction 110 130 - -
Lal1g1357 281 Gene3D - 16 103 IPR012677 -
Lal1g1357 281 MobiDBLite consensus disorder prediction 149 164 - -
Lal1g1357 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 262 IPR000504 GO:0003723
Lal1g1357 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Lal1g1357 281 Gene3D - 193 280 IPR012677 -
Lal1g1357 281 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 270 - -
Lal1g1357 281 MobiDBLite consensus disorder prediction 103 164 - -
Lal1g1357 281 CDD RRM_scw1_like 197 275 - -
Lal1g1357 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1357 Lal-Chr1 15399766 15404220 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1357 - - cam:101503574 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1357 1 15399766 15404220 Lal1g1357 1 15399766 15404220 ECH