Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1323 ATGAGAAATTCTTCACCTTCACAAGATTCTTGGATTCACACTTATCACAATTTACTTCCTCTCTGGGAATCTCTTTCCCTTTCTCTTCATCAGTCAAAGATCCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCAAGACTGGATGTGGAAATGTCTGGCATGTTGAAAGAACAATTGGTTAAAGTGTTTTCTTTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGGTTCTCAATTTGGGTAGATAAGCCTACTCCAGGCATTGGTCTCATGAACCTGAGGTATAGAGATGAGCGTGCAGTGGAATCAAGAGATAAAGTTAGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAAAAAATTTGGTATTGCGTTGCCACTGTTGGGGGCCAGTATTTCTGGGCTCGCCTACAGTCCTTCTCTGCTTTTCGTAGATGGGGCGATACTGAGCAGAGACCATTGGCGCGACGCTTATGGAGCTTGATACAACGAATAGAAGGGATATATAAGGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGTACAGGAAGATATCGAAATCTTATTGAAAGAGCTTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAATCGGCAATTAGTTTGGAATGAATTCTCGGAAATGCTGTTGTTGCTTCTCCCTCTTCTTAATTCATCGTCTGTGAAAAATCTCCTTCGACCATTTTCTAAGGATAAATCATCAAGTTCTGCTGAGGATGACACTTTATGTCCCATTTGCCAGGCTTCTCCAACCACTCCTTTTGTTGCGCTACCTTGTCAGCACAGATACTGTTACTACTGTCTTCGGACACGATGTGCGGCTGCTCCATCATTTAGGTGTTCCAGATGCAGTGAGCCAGTTGTTGCTATGCAAAGGCATGGTGGTGTTTCCACAGAATGA 999 0.4244 MRNSSPSQDSWIHTYHNLLPLWESLSLSLHQSKIPISISRVNQVDAARLDVEMSGMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIGLMNLRYRDERAVESRDKVRTGLEGPGLTVAQKIWYCVATVGGQYFWARLQSFSAFRRWGDTEQRPLARRLWSLIQRIEGIYKAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSAEDDTLCPICQASPTTPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVSTE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1323 332 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Lal1g1323 332 Pfam Zinc finger, C3HC4 type (RING finger) 276 316 IPR018957 GO:0046872
Lal1g1323 332 Pfam Pex2 / Pex12 amino terminal region 50 254 IPR006845 -
Lal1g1323 332 SMART ring_2 276 316 IPR001841 -
Lal1g1323 332 PANTHER - 3 331 - -
Lal1g1323 332 CDD RING-HC_PEX2 276 317 - -
Lal1g1323 332 SUPERFAMILY RING/U-box 269 322 - -
Lal1g1323 332 ProSitePatterns Zinc finger RING-type signature. 292 301 IPR017907 -
Lal1g1323 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 328 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1323 Lal-Chr1 14949248 14953580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1323 K06664 - gmx:100805856 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1323 1 14949248 14953580 Lal1g1323 1 14949248 14953580 ECH