Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1238 ATGGGGGGAGCCTGTTCTAGGAAGCAATACAGGGGTAATGAAGATAGTTCTCGTAGGGTACTTTTGCGACGATTTTCCAAAAGTGGGAGTTTGAGATGGTGGGCATCCTCATTTTCTTGTCCATCTGTAGACATCCAGTTACGAAAGGGAGAATGTCCATCACTGCTGGAATTGTGCATCTTGAAAATAAATCAGGATATTAATAAGTATGATACATTCTCTATGTTGCCGCGGGATATAAGTCAGCAAATTTTTAATAAATTGGTATTCTCCCAGCGTCTGACTGATGTTTCCCTTGAGGCATTTCGAGATTGTGCTCTCCAGGATCTTTACTTGGGAGAATATCTCGGTGTCAACGATGCTTGGATGGATGTCATCTCATCGCAGGGTTCATCTTTGCTTTCTTTAGATCTTTCTGGGTCCGATGTCACTGATTTTGGGCTGACTAACCTGAAAGATTGTGAAAATCTCATGTCTTTAAATCTAAATTATTGTGACAATATTTCCGATCATGGACTGGAGGGAATCAGTGGTCTGTCAAGCTTGACAACTTTGAGTTTTAAAAGAAACGATTCAATATCTGCTCAAGGAATGAGTACCTTTTCTGGTCTTGTTAACTTGACCAAATTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGTCTTGTTCATCTTCAAGGTTTGACCAATTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATGCTGATATGAAGCCTCTATCAGAGCTTGCGAGCTTGAAAAGTCTAGAGATTTCTTCCAGTAAAGTAACCGACTTTGGCATCAGTTTTATCAAAGGTACTGTGCTGTGCCATGTATTATTTGATGTTCCAAAGCAGATTGCAAAAGCTTGCCCTATTAAATCTGGAAGGCTGCCTGGTAACTGCTGCATGCTTGGATTATCTTGCAGGTTGAATTCCTTCATAGACTTCTATCCTTATTCTGTTAATTTTGTTGCGATTATATTCATAGAGGAGCTTTCTGCCCTATCAACCTTGAATCTTAATAGATGTAATCTTTCTGACGTTGGATGTGAAAAGTTTGCAAGACTGGAAAATTTGAAAGTACTGAACTTGGGATTTAATGACATAACGGATGCATGTTTAGCACACTTGAAAGGATTAACAAAATTGGAGAGCTTGAATCTTGATTCATGTAGGATTCGTGACGAAGGATTGATCAACTTGGCAGGCCATAGGAAATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGAAACAACGGGTTACACCATTTATCAGGATTGTCTAGTCTGGAGAAGATAAACCTCTCATTCACAGTAGTTAGTGATAGTGGTTTGAGGAAATTGTGTGGACTCTCATCTCTAAAGTCACTTAATTTGGATGCTCACCAAATTACTGATGCTGGGTTGGCAAACCTTACAAGTTTGACTGGGCTTACTGAGCTGGATCTGTTTGGCGCTCGAATCACAGACTTTGGAACGGGCTATTTGAAAAAACTTAAGAACCTGACATCCCTGGAAATATGTGGTGGGGGTTTAACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTAATGTGCTTAAATTTATCTCAAAACTGCAACCTTACGGACAAAACCCTGGAGTTAATTTCTGGGCTTTCTGGGTTGATTACTTTGAATGTGTCAAACTGTCGTATCACACATGCTGGACTACTGCATTTGAAAACACTAAAGAATCTAAGGTCTCTGACATTGGAGTCATGTAAGGTGACAGCTAATGACATTAAGAAACTTCAATCAACATATCTCCCAAATTTGGTAAGCTTCAGGCCAGAGTAG 1839 0.397 MGGACSRKQYRGNEDSSRRVLLRRFSKSGSLRWWASSFSCPSVDIQLRKGECPSLLELCILKINQDINKYDTFSMLPRDISQQIFNKLVFSQRLTDVSLEAFRDCALQDLYLGEYLGVNDAWMDVISSQGSSLLSLDLSGSDVTDFGLTNLKDCENLMSLNLNYCDNISDHGLEGISGLSSLTTLSFKRNDSISAQGMSTFSGLVNLTKLDLERCPGIHGGLVHLQGLTNLESLNLKWCNCITDADMKPLSELASLKSLEISSSKVTDFGISFIKGTVLCHVLFDVPKQIAKACPIKSGRLPGNCCMLGLSCRLNSFIDFYPYSVNFVAIIFIEELSALSTLNLNRCNLSDVGCEKFARLENLKVLNLGFNDITDACLAHLKGLTKLESLNLDSCRIRDEGLINLAGHRKLNCLELSDTEVGNNGLHHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAHQITDAGLANLTSLTGLTELDLFGARITDFGTGYLKKLKNLTSLEICGGGLTDAGVKNIKELSSLMCLNLSQNCNLTDKTLELISGLSGLITLNVSNCRITHAGLLHLKTLKNLRSLTLESCKVTANDIKKLQSTYLPNLVSFRPE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1238 612 Gene3D Ribonuclease Inhibitor 479 610 IPR032675 -
Lal1g1238 612 PANTHER UNCHARACTERIZED 2 251 - -
Lal1g1238 612 PANTHER UNCHARACTERIZED 333 569 - -
Lal1g1238 612 Gene3D Ribonuclease Inhibitor 309 405 IPR032675 -
Lal1g1238 612 Gene3D Ribonuclease Inhibitor 406 478 IPR032675 -
Lal1g1238 612 ProSiteProfiles Leucine-rich repeat profile. 362 382 IPR001611 GO:0005515
Lal1g1238 612 Gene3D Ribonuclease Inhibitor 220 283 IPR032675 -
Lal1g1238 612 Gene3D Ribonuclease Inhibitor 123 219 IPR032675 -
Lal1g1238 612 Pfam Leucine Rich repeat 457 475 IPR001611 GO:0005515
Lal1g1238 612 Pfam Leucine Rich repeat 433 454 IPR001611 GO:0005515
Lal1g1238 612 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Lal1g1238 612 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Lal1g1238 612 Pfam Leucine Rich repeat 180 201 IPR001611 GO:0005515
Lal1g1238 612 SMART LRR_CC_2 577 601 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 457 480 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 384 408 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 154 179 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 228 253 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 432 456 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 528 553 IPR006553 -
Lal1g1238 612 SMART LRR_CC_2 336 360 IPR006553 -
Lal1g1238 612 SUPERFAMILY RNI-like 316 601 - -
Lal1g1238 612 SUPERFAMILY RNI-like 93 275 - -
Lal1g1238 612 Pfam Leucine rich repeat 506 566 IPR001611 GO:0005515
Lal1g1238 612 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Lal1g1238 612 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 333 569 - -
Lal1g1238 612 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1238 Lal-Chr1 13682930 13693465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1238 336 512 Receptor kinase-like Gene Family AT1G75640 28.814 4.76e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1238 - - gmx:100800666 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1238 1 13682930 13693465 Lal1g1238 1 13682930 13693465 ECH