Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0825 ATGTGTGTAGATACAACAAGTGAAAGCGACGATTCGAATGAGGATGTTAACTACAACCGATGGAAATTTTCACCTAGAATTCGGTTAAGGATGGATGTTGAGAGGGTTCTTGATGTTTTTGGACAAGATGATCCCATGTTTGATTTTGGACTTGCTTTAGATAAGTTGCATATAAAGCCATCAGTTATTCTTGTTAGAGAAGTTCTTTTCATGACGTTGAAACGCATAAACTGTGAAAATAAGGGCAAGTGTGCGAAGTTGGCGTACAAATTTTTTGTGTGGTGCAGTCAACAGGAGGGTTACCGACACACTGCAAACTCCTATAACCTGATTATGCAGATATTTGCACAGTGTGAGGAACTTAAAGCAATGTGGAGGCTAGTTGATGAGATGATCGAGAATGGGGTTCCAGCTACCGCACGTACTTTCAACATTTTGATTTGTACTTGTGGTGAGGCAGGTTTTGCTAGGAGATTGGTGGTGAAGTTTGTAAAGTCAAAGTCATTTAACTACCGACCTTTTAAGCACTCATATAATGCAATTCTCCAGTGTCTTCTCGTATTAAATCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTACTTGATGGTTTTTCCTCGGATGTTTTAACTTACAATATTGTCATGTTTGCGAAGTATAGACTTGGGAAGTTGTATCAGTTCCACAGGTTGCTAGATGAGATGAGTAGACATGGCCTTTCTCCCGATTTTCATACTTATAACATTCTCCTTCATGTTCTTGGTAAAGGAGACAAACCACTAGCTGCTCTTAATCTTTTAAGTCACATGAGAGAAACCGGTATGGAGCCAACTGTTCTTCATTTCACCACATTGATAGATGGACTGAGTAGAGCTGGGAATTTGGATGCATGCGATTATTTTTTTGATGAAATGATAAAGAATGGGTGCATGCCAGATGTAGTGGCATACACTGTAATGATCACAGGATATGTAGTCGCCGGTGAGGTTCAGAAAGCTCAGGAAATGTTTAACGAAATGATTTCTAGAGGGCAAATCCCTAACGTATTTACATACAATTCCATGATTCGTGGACTGTGTCTGGTAGGGAAGTTTGATGAAGCATTCTCAATGCTCAAGGAAATGGAAAGCAAAGGTATTTTTCCAAATTTTGTTGTGTATAGTACGTTAGTGAGTAGTCTACGGAATGCCGGAAAGCTTTCTGAAGCTCATAAACTGATAAAACAAATGATGCAGAAGGGGAAGTATGTCCACCTTCTTTCAAGGTTCAAAGGGAAAGGATATAAGAGATAG 1296 0.3935 MCVDTTSESDDSNEDVNYNRWKFSPRIRLRMDVERVLDVFGQDDPMFDFGLALDKLHIKPSVILVREVLFMTLKRINCENKGKCAKLAYKFFVWCSQQEGYRHTANSYNLIMQIFAQCEELKAMWRLVDEMIENGVPATARTFNILICTCGEAGFARRLVVKFVKSKSFNYRPFKHSYNAILQCLLVLNQYKLIEWVYQQMLLDGFSSDVLTYNIVMFAKYRLGKLYQFHRLLDEMSRHGLSPDFHTYNILLHVLGKGDKPLAALNLLSHMRETGMEPTVLHFTTLIDGLSRAGNLDACDYFFDEMIKNGCMPDVVAYTVMITGYVVAGEVQKAQEMFNEMISRGQIPNVFTYNSMIRGLCLVGKFDEAFSMLKEMESKGIFPNFVVYSTLVSSLRNAGKLSEAHKLIKQMMQKGKYVHLLSRFKGKGYKR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0825 431 Pfam PPR repeat 283 311 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 107 138 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Lal1g0825 431 TIGRFAM PPR: pentatricopeptide repeat domain 386 415 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Lal1g0825 431 Gene3D Tetratricopeptide repeat domain 155 300 IPR011990 GO:0005515
Lal1g0825 431 Gene3D Tetratricopeptide repeat domain 301 428 IPR011990 GO:0005515
Lal1g0825 431 Pfam PPR repeat 379 411 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Lal1g0825 431 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 28 426 - -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Lal1g0825 431 PANTHER OS10G0506000 PROTEIN 28 426 - -
Lal1g0825 431 Pfam PPR repeat family 106 150 IPR002885 -
Lal1g0825 431 Pfam PPR repeat family 209 255 IPR002885 -
Lal1g0825 431 Pfam PPR repeat family 313 361 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Lal1g0825 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0825 Lal-Chr1 5697397 5698692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0825 17 415 Glycosyltransferase AT1G05670 26.733 4.04e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0825 - - ccaj:109794849 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0825 1 5697397 5698692 Lal1g0825 1 5697397 5698692 ECH